Corbi-package           Corbi - Collection of Rudimentary
                        Bioinformatics Tools
URG_getFactor           Calculate normalization factors for URG method
URG_normalize           Normalize using given factors
best_subnets            The best subnetworks
column                  Extract a column from a matrix
extend_subnets          Extend subnetworks from smaller subnetworks
get_adjusted_deg_diff   Calculate adjusted degree differences for given
                        network
get_diff_ratio_net      Construct differential expression ratio network
get_ratio_distribution
                        Calculate expression ratio distribution
get_ratio_distribution2
                        Calculate expression ratio distribution
get_ratio_variance      Calculate expression ratio variances
get_shortest_distances
                        Calculate shortest distances of unweighted
                        network
get_subnets             All subnetworks of limited size
kappa_score             Cohen's kappa score
make_DEG_data           Simulate differentially expressed gene data
                        (Gaussian)
make_DEG_data2          Simulate differentially expressed gene data
                        (Negative binomial)
make_DEG_pattern        Simulate differentially expressed gene pattern
markrank                MarkRank
netDEG                  netDEG: Differentially expressed gene
                        identification method
netDEG_pvalue           Calculate netDEG p-values
net_align               Network alignment method based on conditional
                        random fields
net_query               Network querying method based on conditional
                        random fields
nnzero                  The number of non-zero values of a submatrix
p_combine               Calculate combined p-value
pmultihyper             The Multivariate Hypergeometric Distribution
pmultinom               The Multinomial Distribution
read_net                Read network information from text file
rmultihyper             The Multivariate Hypergeometric Distribution
simulate_dropout        Simulate dropout expression data
simulate_dropout2       Simulate dropout expression data
simulate_sample_groups
                        Simulate sample groups from given samples with
                        labels
submatrix               Extract a submatrix from a matrix
write_net               Write network information to text file
