CNOGpro                 Set up a new CNOGpro experiment
CNOGpro-package         CNOGpro - Copy Numbers of Genes in Prokaryotes
carsonella              CNV experiment of C. Carsonella ruddy
                        (artificial data)
normalizeGC             Normalization of read count data by GC content
plotCNOGpro             Plots the results of a 'CNOGpro' experiment
printCNOGpro            Prints the results of a 'CNOGpro' experiment
runBootstrap            Gene copy numbers with confidence intervals
                        through bootstrapping
runHMM                  Copy number variation inference through a
                        Hidden Markov Model
store                   Store the results of a 'CNOGpro' copy number
                        experiment
summaryCNOGpro          Summarize the 'CNOGpro' experiment
