R: CNV experiment of C. Carsonella ruddy (artificial data)

carsonella {CNOGpro} | R Documentation

## CNV experiment of C. Carsonella ruddy (artificial data)

### Description

This is an example object of class `CNOGpro`, as created by the `CNOGpro` method. The input to this file was a GenBank flat file (Acc. nr: CP003467), and a table of best-hit read locations from a resequencing experiment. The data were created by artificially duplicating one gene and removing another from the chromosome, and is meant for illustration purposes only. The reads were created by the ART sequencing simulator by Huang et al. (2011)

### Usage

    data(carsonella)

### Format

An object of class `CNOGpro`

### Source

Artificial data, produced by the author

### References

Huang,W. et al. (2011) ART: a next-generation sequencing read simulator. Bioinformatics, 28, 593–594.
Nakabachi,A. et al. (2013) Defensive bacteriome symbiont with a drastically reduced genome. Curr. Biol., 23, 1478 – 1484

### Examples

    data(carsonella)
    summaryCNOGpro(carsonella)
    plotCNOGpro(carsonella)

[Package CNOGpro version 1.1 Index]