R: Plots the results of a 'CNOGpro' experiment

plotCNOGpro {CNOGpro} | R Documentation

## Plots the results of a `CNOGpro` experiment

### Description

Plots the coverage in a number of ways: Coverage along the chromosome, density plots of coverage for each individual copy number state (as assigned by the runHMMmethod) and coverage by GC percentage of the reads, before and after normalization.

### Usage

    plotCNOGpro(experiment)

### Arguments

`experiment` | An object of class `CNOGpro`

### Author(s)

Ola Brynildsrud

### See Also

`CNOGpro`

### Examples

    data(carsonella)
    carsonella_normalized <- normalizeGC(carsonella)
    carsonella_hmm <- runHMM(carsonella_normalized, nstates=5)
    plotCNOGpro(carsonella_hmm)

[Package CNOGpro version 1.1 Index]