R: CNOGpro - Copy Numbers of Genes in Prokaryotes

CNOGpro-package {CNOGpro} | R Documentation

## CNOGpro - Copy Numbers of Genes in Prokaryotes

### Description

Detects copy number variation in resequencing experiments

### Details

Package: | CNOGpro
Type: | Package
Version: | 1.1
Date: | 2015-01-12
License: | GPL-2

After mapping the reads from a resequencing experiment to a reference organism, `CNOGpro` allows the user to count coverage of the reference in sliding windows, normalize the counts based on observed GC-bias, and run two main models for inferring copy number variation and breakpoints - One approach using a Hidden Markov Model, and one using bootstrapping. The latter will also produce confidence intervals of the desired range around the observed copy number.

### Author(s)

Ola Brynildsrud Maintainer: Ola Brynildsrud <ola.brynildsrud@nmbu.no>

### References

Manuscript forthcoming...

[Package CNOGpro version 1.1 Index]