R: Copy Numbers of Genes in prokaryotes

# Copy Numbers of Genes in prokaryotes

## Documentation for package ‘CNOGpro’ version 1.1

- DESCRIPTION file.

## Help Pages

CNOGpro-package | CNOGpro - Copy Numbers of Genes in Prokaryotes
carsonella | CNV experiment of C. Carsonella ruddy (artificial data)
CNOGpro | Set up a new CNOGpro experiment
normalizeGC | Normalization of read count data by GC content
plotCNOGpro | Plots the results of a 'CNOGpro' experiment
printCNOGpro | Prints the results of a 'CNOGpro' experiment
runBootstrap | Gene copy numbers with confidence intervals through bootstrapping
runHMM | Copy number variation inference through a Hidden Markov Model
store | Store the results of a 'CNOGpro' copy number experiment
summaryCNOGpro | Summarize the 'CNOGpro' experiment