R: Store the results of a 'CNOGpro' copy number experiment

store {CNOGpro}

R Documentation

Store the results of a `CNOGpro` copy number experiment

Description

Prints the relevant data to a text file. By default, the entire gene table including copy numbers inferred by bootstrapping and HMM is printed. However, using the flag outputEntireTable=F will make the function print only the HMM breakpoints with associated most probable states.

Usage

store(experiment, outputEntireTable = T, path = "./")

Arguments

`experiment`	An object of class `CNOGpro`.
`outputEntireTable`	A logical flag indicating if the entire `genes` attribute table is to be printed. If set to FALSE, only the HMM table of breakpoints and states will be printed.
`path`	The path to be written to.

Details

Outputs data to a tab-separated text-file. User must have permission to print to the output directory.

Author(s)

Ola Brynildsrud

Examples

data(carsonella)
## Not run: store(carsonella, path="./")

[Package CNOGpro version 1.1 Index]