ChemoSpec-package       Exploratory Chemometrics for Spectroscopy
Spectra                 Spectra Objects
SrE.IR                  IR and NMR Spectra of Serenoa repens (Saw
                        Palmetto) Oil Extracts and Reference Oils
aovPCAloadings          Plot aovPCAscores Loadings of a Spectra Object
aovPCAscores            Plot ANOVA-PCA Scores from a Spectra Object
aov_pcaSpectra          ANOVA-PCA Analysis of Spectra Data
avgFacLvls              Average Levels of a Factor in a Data Matrix
baselineSpectra         Baseline Correction of a Spectra Object
binData                 Bin or Bucket Data
binSpectra              Bin or Bucket a Spectra Object
c_pcaSpectra            Classical PCA of Spectra Objects
check4Gaps              Check for Missing Values (Gaps) in a Spectra
                        Object
chkSpectra              Verify the Integrity of a Spectra Object
clupaSpectra            Hierarchical Cluster-Based Peak Alignment on a
                        Spectra Object
colLeaf                 Color the Leaves of a Dendrogram Based on a
                        Spectra Object
colorSymbol             Colors and Symbols in ChemoSpec and Spectra
                        Objects
conColScheme            Change the Color Scheme of a Spectra Object
coordProjCS             Modified Version of coordProj from mclust
cv_pcaSpectra           Cross-Validation of Classical PCA Results for a
                        Spectra Object
evalClusters            Evaluate or Compare the Quality of Clusters
                        Quantitatively
files2SpectraObject     Import Data into a Spectra Object
groupNcolor             Assign Group Membership and Colors for a
                        Spectra Object
hcaScores               HCA on PCA scores from a Spectra Object
hcaSpectra              Plot HCA Results of a Spectra Object
hmapSpectra             Seriated Heat Map for a Spectra Object
hypTestScores           Conduct MANOVA using PCA Scores and Factors in
                        a Spectra Object
isWholeNo               Determine if a Number is a Whole Number
labelExtremes           Label Extreme Values in a 2D Data Set
labelExtremes3d         Identify Extreme Values in 3D
loopThruSpectra         Display the Spectra in a Spectra Object One at
                        a Time
makeEllipsoid           Create Ellipsoid
mclust3D                mclust Analysis in 3D
mclust3dSpectra         mclust Analysis of a Spectra Object in 3D
mclustSpectra           mclust Analysis of a Spectra Object PCA Results
metMUD1                 Made Up NMR Data Sets
normSpectra             Normalize a Spectra Object
normVec                 Normalize a Vector to range -1 to +1
pcaDiag                 Outlier Diagnostic Plots for PCA of a Spectra
                        Object
plot2Loadings           Plot PCA Loadings from a Spectra Object Against
                        Each Other
plotHCA                 Plot Dendrogram for Spectra Object
plotLoadings            Plot PCA Loadings for a Spectra Object
plotScores              Plot PCA Scores of a Spectra Object
plotScores3D            3D PCA Score Plot for a Spectra Object
plotScoresCor           Compute Confidence Ellipses
plotScoresDecoration    Decorate PCA Score Plot of a Spectra Object
plotScoresRGL           Interactive 3D Score Plot of a Spectra Object
plotScree               Scree Plots of PCA Results for a Spectra Object
plotSpectra             Plot Spectra Object
plotSpectraDist         Plot the Distance Between Spectra in a Spectra
                        Object
plotSpectraJS           Plot a Spectra Object Interactively
q2rPCA                  Conversion Between PCA Classes
r_pcaSpectra            Robust PCA of a Spectra Object
removeFreq              Remove Frequencies from a Spectra Object
removeGroup             Remove Groups or Samples from a Spectra Object
rowDist                 Compute Distance Between Rows of a Matrix
sPlotSpectra            s-Plot of Spectra Data (Post PCA)
sampleDistSpectra       Compute the Distance Between Samples in a
                        Spectra Object
seX                     Functions to Compute Measures of Central
                        Tendency and Spread.  seX!
sgfSpectra              Apply Savitzky-Golay filters to a Spectra
                        object
shrinkLeaf              Shrink the Leaves of a Dendrogram Based on a
                        Spectra Object
splitSpectraGroups      Create New Groups from an Existing Spectra
                        Object
sumGroups               Summarize the Group Parameters of a Spectra
                        Object
sumSpectra              Summarize a Spectra Object
surveySpectra           Plot Measures of Central Tendency and Spread
                        for a Spectra Object
