5ec58112eb169070e83d64cc1ca29b75 *CITATION
3167ae1896f769aff5d250e51ceaaec9 *DESCRIPTION
20f99356ca987d3887d984798584deb0 *INDEX
f69e101781c184c57815e33ea2dba5fd *Meta/Rd.rds
4d1492de7968466564e971368d24d147 *Meta/features.rds
9572802b1a0ac6a2bd92594ee177ddae *Meta/hsearch.rds
4f14deba69f0ef861428ab9c3bfd519c *Meta/links.rds
dbefcb1e6968441097f68ac902c6a7bd *Meta/nsInfo.rds
53b7ffe5a8bdb2e70745492b66cbeb8e *Meta/package.rds
24b5a065e8f9de268fdd2001fc971e52 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/castor
c82fe5c9c91ca1dbb621c27805daa4a4 *R/castor.rdb
b37d462cebab1bb1aa1db089307b0a1e *R/castor.rdx
caa100a0fef2041e0b618d01dde73a07 *help/AnIndex
d4d4abbf3ec9fde396491e1c3aadd6cb *help/aliases.rds
2d2e402a4e9599424de810cc4bb31f3d *help/castor.rdb
1d7463422d1e64404c1c18f2154b186a *help/castor.rdx
9f4991491c45a5e22c460494a9188819 *help/paths.rds
23851645f1daf1af90f369c21784221e *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
dd3dd46c46c88718fdd829970c716666 *html/asr_empirical_probabilities.html
a27b17ace7d0d82d75fc29d711466ed4 *html/asr_independent_contrasts.html
98d14f34710ff71da962d06325bc3027 *html/asr_max_parsimony.html
07d1f4903de2ba56c7c293f5e5d83160 *html/asr_mk_model.html
a91b8f54a5d697618e54958bdaab1c29 *html/asr_squared_change_parsimony.html
9a98705507cf9ea726180d79f42b489e *html/asr_subtree_averaging.html
c226ae6dde6092989cec51863fec1ab8 *html/castor.html
2c66d54e10c64cc954d54e60f7ccfe8b *html/collapse_monofurcations.html
797bf307ff7eaa3489361cfefd2c360b *html/collapse_tree_at_resolution.html
e4df7db2f406c4a2c05b33491d8e7df0 *html/congruent_divergence_times.html
62db1ea92c1525a0ce3e020350cc85f1 *html/congruent_hbds_model.html
cae6a9ba4f80c05a59fab8c01e81d6cb *html/consentrait_depth.html
0958cc55a05e4713997511b1a4946d7b *html/count_lineages_through_time.html
471cffbc7b5f4bcac460852814b7831d *html/count_tips_per_node.html
7a910cc3dfd9432b8d33dda571b89564 *html/count_transitions_between_clades.html
c458006fc0fe24440691cba76e5bbe19 *html/date_tree_red.html
530d68d6891c34da865fad11c22d0a76 *html/discrete_trait_depth.html
38c208de2e373dd785434eb9f5e572bf *html/evaluate_spline.html
4a523d0738b7ea90eccff976464ad45d *html/exponentiate_matrix.html
ab8cc9d125c12476ad9fc8dd25698b32 *html/extend_tree_to_height.html
955e64832c84d72a059c2b0c95e9417b *html/extract_fasttree_constraints.html
f28f8980eb7046f6681fbde85fc41c25 *html/find_farthest_tip_pair.html
c0810fa5420cf47b3b51f3acba752637 *html/find_farthest_tips.html
1c23ec69cc907d1eb4730e1b7e94dc24 *html/find_nearest_tips.html
09066db2455202a0883d22761f4892ba *html/find_root.html
7e46a76460364cda6b9578bd86727f69 *html/find_root_of_monophyletic_tips.html
20a28d6f0bce73d3dae8108ed69ddce3 *html/fit_and_compare_bm_models.html
9a0a6c0897c887efe2aa385bd0a6de1b *html/fit_and_compare_sbm_const.html
0774a3e9f7a64a7db0c4d47fb6f6dcf3 *html/fit_bm_model.html
bf5f291bff698aae958a0ba1f68eea9a *html/fit_hbd_model_on_grid.html
b56509abdc7f209220e633ae0d69d112 *html/fit_hbd_model_parametric.html
f869b86bbfffac077bc0eb6e10de06e8 *html/fit_hbd_pdr_on_best_grid_size.html
f2bfd40f5484b8ec5b4a62b1819cfdf1 *html/fit_hbd_pdr_on_grid.html
cf99acddcdc6f3bac5628d7c16a98f6c *html/fit_hbd_pdr_parametric.html
61c32b4022168d10ddae6d5e1d185397 *html/fit_hbd_psr_on_best_grid_size.html
09f46ec6a6d514d6f29d90b63d0107f3 *html/fit_hbd_psr_on_grid.html
c318689c86e6934a4817c1e2ada52cc6 *html/fit_hbd_psr_parametric.html
d751a735b4bb937aaef644251f86e940 *html/fit_hbds_model_on_grid.html
710b72f2ffd85f368f3f0dc11c483d1c *html/fit_hbds_model_parametric.html
d34f2b451261e689bb2d469744855ecf *html/fit_mk.html
0cbf48fb37559e2eac89dc9c92cdb428 *html/fit_musse.html
ba277c84fe58b8cf965a8154b0b2a693 *html/fit_sbm_const.html
187a90e0852f4e8ed4c211bdb61473d8 *html/fit_sbm_geobiased_const.html
9b46ea23767bb037c3f0d19392d14f6c *html/fit_sbm_linear.html
39ff4469241d983578fdc51ef343a417 *html/fit_sbm_on_grid.html
8cc61fb92b8878615d129873c92dc87f *html/fit_sbm_parametric.html
5478786d1ad107906f417a5bdb038cf7 *html/fit_tree_model.html
943d9de2d636df74ee7f10f10ce1e3cd *html/gamma_statistic.html
02179d699218daba90fd75e21811b866 *html/generate_gene_tree_msc.html
f7cbb6237c0e0d74c94d4f0b1ffd9f3b *html/generate_gene_tree_msc_hgt_dl.html
efc5448311e82e6aab10678ffd2be414 *html/generate_random_tree.html
5575b5b8d16de8c9996a028734c2a894 *html/generate_tree_hbd_reverse.html
ccf450b55e077451f4434d420aaabc04 *html/generate_tree_hbds.html
3925630d44a829732bdd198e6532bd16 *html/generate_tree_with_evolving_rates.html
aafc1a7fcdde7365bf27da08aed0b8fc *html/geographic_acf.html
c19a56f63d641e215b01aefe5a0c2d52 *html/get_all_distances_to_root.html
fff618bc5eb4fb123b05c285315fb7d8 *html/get_all_node_depths.html
28b540558769be8b9b73c297c090c642 *html/get_all_pairwise_distances.html
690367ab23f2b86892ff9aaad30f4d0c *html/get_clade_list.html
3890b48178e5ef2797607009cb754fab *html/get_independent_contrasts.html
ed6d03fb11eb48708499115a04d251fb *html/get_mrca_of_set.html
684ef2aa85673795ba2487ce6b0f97f2 *html/get_pairwise_distances.html
b8f823723f70777664173f829cd59644 *html/get_pairwise_mrcas.html
005ba9057b8668636704deafb6c52591 *html/get_random_diffusivity_matrix.html
347b36b3edf8888f553f7e275b84cd5a *html/get_random_mk_transition_matrix.html
1e826920bf8ff51825f3429a5f66ec28 *html/get_reds.html
29bbd6869275de699b5c13ec423ea530 *html/get_stationary_distribution.html
1c4593075ad5f650ac27bfd5ca13d9c4 *html/get_subtree_at_node.html
e202a92fcdfd0326503fa7904a283bd1 *html/get_subtree_with_tips.html
da267c3afd424a9d61fc4a6ce950c4d9 *html/get_subtrees_at_nodes.html
ebccd22e15059ee36e0c02c63f29da3a *html/get_tips_for_mrcas.html
2487c19780eada99149205176fe51d73 *html/get_trait_acf.html
9ddb48fcae26968d5e7169a63efe82f8 *html/get_trait_stats_over_time.html
176cc855967a6be81b0a6ccaab83432c *html/get_transition_index_matrix.html
744384bede646bc879d3a5afd5cfffe3 *html/get_tree_span.html
e7db408837c5599f0a44a734c48ac253 *html/get_tree_traversal_root_to_tips.html
97452add43aa1b127d1444fb0d687db7 *html/hsp_binomial.html
616ab008aa595aa059fea6e934539108 *html/hsp_empirical_probabilities.html
b5141dee5adc3f24e221e3421e05f4cb *html/hsp_independent_contrasts.html
443846f1499827b6308271b23a95e922 *html/hsp_max_parsimony.html
73f65bc7cc9ff3e05e9ddc27580bef7f *html/hsp_mk_model.html
a79b7590c7b29b8e527607f1a70f8f69 *html/hsp_nearest_neighbor.html
b8e23139b8f9864ffea43569089fe600 *html/hsp_squared_change_parsimony.html
1596a0f8e84594f54adac3afd49b07b0 *html/hsp_subtree_averaging.html
d8c8ca5687658a3d480aadc4535d4d0c *html/is_bifurcating.html
d0209f9f454a5defe34961ef85e2a0a5 *html/is_monophyletic.html
92d0dcfbdd67947ab9fdba9e4444e92f *html/join_rooted_trees.html
e56f750da5578b8dbf366935183f2470 *html/loglikelihood_hbd.html
641d735cf81b80aa3bdc38c4771c8200 *html/map_to_state_space.html
33f6afc88c908266847df76ddea06a26 *html/merge_nodes_to_multifurcations.html
ae785dc13788297c22360ac9bf93b5cb *html/merge_short_edges.html
773f43005dded7b200386ac7501042cb *html/model_adequacy_hbd.html
d19abc66844dd483bad27c07007daf6f *html/model_adequacy_hbds.html
ecf8c6da6f1dba242c0766da61517184 *html/multifurcations_to_bifurcations.html
931f38bc6b3261e1e84b8ab9c457c0b2 *html/pick_random_tips.html
3f6e9910f20a0467d4a2c40a57b257f1 *html/read_tree.html
2474acec469b3ec021f48c22288e914e *html/reconstruct_past_diversification.html
81aaef2f44e1a2b3942fef640445ae23 *html/reorder_tree_edges.html
e3d6d288f381777f2e2514c2f1b1ef85 *html/root_at_midpoint.html
bc241725eb407acb159e39411f002aef *html/root_at_node.html
0e429bdaf6b2f1205d16af83387abac2 *html/root_in_edge.html
d847c7e27326b0139962fd152b4632c3 *html/root_via_outgroup.html
79dfb38bd9a94e818fa438bc432299bf *html/shift_clade_times.html
c14628317d7de2c743aadd105b4de088 *html/simulate_bm_model.html
5b2db4f80eea694ee3f330b0560282c4 *html/simulate_deterministic_hbd.html
d2b049a86f7ad8fe6a7814f2e0aba970 *html/simulate_deterministic_hbds.html
015b08c398ce0fe260a460bb7b429765 *html/simulate_diversification_model.html
237cd9842ca6525ce4da1f09fa59ac0d *html/simulate_dsse.html
ee49048f656f36843ddec8f6eff98800 *html/simulate_mk_model.html
ec29a3580847c2fe7bd7624fc982bb7d *html/simulate_ou_model.html
89b7f21e9c82db9cf0e2e3802d4a5557 *html/simulate_rou_model.html
85e73d77937511816a06a1e9e8ed12e2 *html/simulate_sbm.html
517442104a96727735e311c50f05fb41 *html/simulate_tdsse.html
940ad21685eef19ab88d080a300c22ed *html/spline_coefficients.html
60965a816ba777e2375336524b69dcf9 *html/split_tree_at_height.html
191e673e04d822fbeecdb217d059c8ce *html/tree_distance.html
9c064c283337290427ebe422e5ca713b *html/tree_from_branching_ages.html
fb7896b0bb840de03881ecc6bcafbd35 *html/tree_from_sampling_branching_ages.html
abd152515154a112c9ed36537a2cdf87 *html/tree_imbalance.html
25a74b261834a74237aa45f8a6304ba1 *html/trim_tree_at_height.html
df0530dcfb2df83dc5a5ab314ce2ef97 *html/write_tree.html
d22c2c7acb128ee6ea464cabdcea7590 *libs/x64/castor.dll
