Everything You Wanted To Know About Your R Session

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R.version
search()
.libPaths()
options()
Sys.getenv()
Sys.info()
.Machine
.Platform

Attached Packages

Installed Packages

## R.version

platform | i486-pc-linux-gnu
arch | i486
os | linux-gnu
system | i486, linux-gnu
status |
major | 2
minor | 5.1
year | 2007
month | 06
day | 27
svn rev | 42083
language | R
version.string | R version 2.5.1 (2007-06-27)

## search()

.GlobalEnv
package:graphics
package:grDevices
package:datasets
package:stats
package:brew
package:utils
package:methods
Autoloads
package:base

## .libPaths()

/usr/local/lib/R/site-library
/usr/lib/R/site-library
/usr/lib/R/library

## options()

add.smooth | TRUE
browser | firefox
check.bounds | FALSE
continue | +
contrasts |
unordered | contr.treatment
ordered | contr.poly
device | X11
digits | 7
dvipscmd | /usr/bin/dvips
echo | TRUE
editor | vi
encoding | native.enc
example.ask | default
expressions | 5000
help.try.all.packages | FALSE
HTTPUserAgent | R (2.5.1 i486-pc-linux-gnu i486 linux-gnu)
internet.info | 2
keep.source | TRUE
keep.source.pkgs | FALSE
latexcmd | /usr/bin/latex
locatorBell | TRUE
mailer | mailx
max.print | 99999
menu.graphics | TRUE
na.action | na.omit
OutDec | .
pager | /usr/lib/R/bin/pager
papersize | a4
par.ask.default | FALSE
pdfviewer | /usr/bin/open
pkgType | source
printcmd | /usr/bin/lpr
prompt | >
repos | _at_CRAN_at_
rl_word_breaks | "\'`><=%;,|&{()}
scipen | 0
show.coef.Pvalues | TRUE
show.error.messages | TRUE
show.signif.stars | TRUE
str |
strict.width | no
digits.d | 3
vec.len | 4
stringsAsFactors | TRUE
timeout | 60
ts.eps | 1e-05
ts.S.compat | FALSE
unzip | /usr/bin/unzip
verbose | FALSE
warn | 0
warnings.length | 1000
width | 80
X11colortype | true
X11fonts |
-adobe-helvetica-%s-%s-*-*-%d-*-*-*-*-*-*-*
-adobe-symbol-medium-r-*-*-%d-*-*-*-*-*-*-*

## Sys.getenv()

_ | /usr/bin/R
AWK | /usr/bin/awk
COLORTERM |
COLUMNS | 109
DBUS_SESSION_BUS_ADDRESS | unix:abstract=/tmp/dbus-a5GuEcBU6j,guid=2e4415081a439b1a0b19d20046c07833
DESKTOP_SESSION | kde
DISPLAY | :0.0
DM_CONTROL | /var/run/xdmctl
EDITOR | vi
EGREP | /bin/grep -E
GS_LIB | /home/hornerj/.fonts
GTK2_RC_FILES | /home/hornerj/.gtkrc-2.0-kde:/home/hornerj/.kde/share/config/gtkrc-2.0
GTK_RC_FILES | /etc/gtk/gtkrc:/home/hornerj/.gtkrc:/home/hornerj/.kde/share/config/gtkrc
HOME | /home/hornerj
INPUTRC | /home/hornerj/.inputrc
KDE_FULL_SESSION | true
KDE_MULTIHEAD | false
KONSOLE_DCOP | DCOPRef(konsole-25719,konsole)
KONSOLE_DCOP_SESSION | DCOPRef(konsole-25719,session-1)
LANG | en_US.UTF-8
LD_LIBRARY_PATH | /usr/lib/R/lib::/usr/lib/j2se/1.4/jre/lib/i386/client:/usr/lib/j2se/1.4/jre/lib/i386:/usr/lib/j2se/1.4/jre/../lib/i386::/usr/lib:/lib:/usr/lib/j2se/i386:/usr/lib/jni
LINES | 77
LN_S | ln -s
LOGNAME | hornerj
LS_COLORS | no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.avi=01;35:*.fli=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.flac=01;35:*.mp3=01;35:*.mpc=01;35:*.ogg=01;35:*.wav=01;35:
MAKE | make
OLDPWD | /home/hornerj/DISCHARGE/PROJECTA
PAGER | /usr/bin/pager
PATH | /home/hornerj/bin:/home/hornerj/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/bin/X11:/usr/games
PERL | /usr/bin/perl
PWD | /home/hornerj/brew_rforge/trunk/inst
R_ARCH |
R_BROWSER | sensible-browser
R_DOC_DIR | /usr/share/R/doc
R_DVIPSCMD | /usr/bin/dvips
R_HISTFILE | /home/hornerj/.Rhistory
R_HOME | /usr/lib/R
R_INCLUDE_DIR | /usr/share/R/include
R_LATEXCMD | /usr/bin/latex
R_LIBS_SITE | /usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library
R_LIBS_USER | ~/R/i486-pc-linux-gnu-library/2.5
R_MAKEINDEXCMD | /usr/bin/makeindex
R_PAPERSIZE | letter
R_PAPERSIZE_USER | a4
R_PDFVIEWER | /usr/bin/open
R_PLATFORM | i486-pc-linux-gnu
R_PRINTCMD | /usr/bin/lpr
R_RD4DVI | ae
R_RD4PDF | times,hyper
R_SESSION_TMPDIR | /tmp/RtmpEI2P1C
R_SHARE_DIR | /usr/share/R/share
R_UNZIPCMD | /usr/bin/unzip
R_USE_AQUA_SUBDIRS | no
R_ZIPCMD | /usr/bin/zip
SESSION_MANAGER | local/biostat028:/tmp/.ICE-unix/30462
SHELL | /bin/bash
SHLVL | 1
SSH_AGENT_PID | 30393
SSH_AUTH_SOCK | /tmp/ssh-qqVJQ30347/agent.30347
TAR | tar
TERM | xterm
USER | hornerj
WINDOWID | 33554439
XCURSOR_THEME | kubuntu
XDM_MANAGED | /var/run/xdmctl/xdmctl-:0,maysd,mayfn,sched,rsvd,method=classic

## Sys.info()

sysname | Linux
release | 2.6.20-16-generic
version | #2 SMP Thu Jun 7 20:19:32 UTC 2007
nodename | biostat028
machine | i686
login | unknown
user | hornerj

## .Machine

double.eps | 2.22044604925031e-16
double.neg.eps | 1.11022302462516e-16
double.xmin | 2.2250738585072e-308
double.xmax | 1.79769313486232e+308
double.base | 2
double.digits | 53
double.rounding | 5
double.guard | 0
double.ulp.digits | -52
double.neg.ulp.digits | -53
double.exponent | 11
double.min.exp | -1022
double.max.exp | 1024
integer.max | 2147483647
sizeof.long | 4
sizeof.longlong | 8
sizeof.longdouble | 12
sizeof.pointer | 4

## .Platform

OS.type | unix
file.sep | /
dynlib.ext | .so
GUI | X11
endian | little
pkgType | source
path.sep | :
r_arch |

# Attached Packages

## graphics

Package | graphics
Version | 2.5.1
Priority | base
Title | The R Graphics Package
Author | R Development Core Team and contributors worldwide
Maintainer | R Core Team <R-core_at_r-project.org>
Description | R functions for base graphics
Imports | grDevices
License | GPL Version 2 or later.
Built | R 2.5.1; ; 2007-07-19 14:31:16; unix

## grDevices

Package | grDevices
Version | 2.5.1
Priority | base
Title | The R Graphics Devices and Support for Colours and Fonts
Author | R Development Core Team and contributors worldwide
Maintainer | R Core Team <R-core_at_r-project.org>
Description | Graphics devices and support for base and grid graphics
License | GPL Version 2 or later.
Built | R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:15; unix

## datasets

Package | datasets
Version | 2.5.1
Priority | base
Title | The R Datasets Package
Author | R Development Core Team and contributors worldwide
Maintainer | R Core Team <R-core_at_r-project.org>
Description | Base R datasets
License | GPL Version 2 or later.
Built | R 2.5.1; ; 2007-07-19 14:31:18; unix

## stats

Package | stats
Version | 2.5.1
Priority | base
Title | The R Stats Package
Author | R Development Core Team and contributors worldwide
Maintainer | R Core Team <R-core_at_r-project.org>
Description | R statistical functions
License | GPL Version 2 or later.
Built | R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:17; unix

## brew

Package | brew
Type | Package
Title | Templating Framework for Report Generation
Version | 0.1-2
Date | 2007-04-16
Author | Jeffrey Horner
Maintainer | Jeffrey Horner <jeff.horner_at_vanderbilt.edu>
Description | brew implements a templating framework for mixing text and R code for report generation. brew template syntax is similar to PHP, Ruby's erb module, Java Server Pages, and Python's psp module.
License | GPL 2.0
Built | R 2.5.1; ; 2007-08-20 15:33:15; unix

## utils

Package | utils
Version | 2.5.1
Priority | base
Title | The R Utils Package
Author | R Development Core Team and contributors worldwide
Maintainer | R Core Team <R-core_at_r-project.org>
Description | R utility functions
License | GPL Version 2 or later.
Built | R 2.5.1; ; 2007-07-19 14:31:15; unix

## methods

Package | methods
Version | 2.5.1
Priority | base
Imports | utils
Title | Formal Methods and Classes
Author | R Development Core Team
Maintainer | R Core Team <R-core_at_r-project.org>
Description | Formally defined methods and classes for R objects, plus other programming tools, as described in the reference
References | ``Programming with Data'' (1998), John M. Chambers, Springer NY. http://www.omegahat.org/RSMethods/Intro.ps and .../Intro.pdf
License | GPL Version 2 or later.
Built | R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:21; unix

## base

Package | base
Version | 2.5.1
Priority | base
Title | The R Base Package
Author | R Development Core Team and contributors worldwide
Maintainer | R Core Team <R-core_at_r-project.org>
Description | Base R functions
License | GPL Version 2 or later.
Built | R 2.5.1; ; Thu Jul 19 14:31:13 EDT 2007; unix

# Installed Packages

## brew

Package | brew
Type | Package
Title | Templating Framework for Report Generation
Version | 0.1-2
Date | 2007-04-16
Author | Jeffrey Horner
Maintainer | Jeffrey Horner <jeff.horner_at_vanderbilt.edu>
Description | brew implements a templating framework for mixing text and R code for report generation. brew template syntax is similar to PHP, Ruby's erb module, Java Server Pages, and Python's psp module.
License | GPL 2.0
Built | R 2.5.1; ; 2007-08-20 15:33:15; unix

## Cairo

Package | Cairo
Version | 1.3-5
Title | R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output.
Author | Simon Urbanek <Simon.Urbanek_at_r-project.org>, Jeffrey Horner <jeff.horner_at_vanderbilt.edu>
Maintainer | Simon Urbanek <Simon.Urbanek_at_r-project.org>
Depends | R (>= 1.9.0)
Description | This package provides a Cairo graphics device that can be use to create high-quality vector (PDF, PostScript and SVG) and bitmap output (PNG,JPEG,TIFF), and high-quality rendering in displays (X11 and Win32). Since it uses the same back-end for all output, copying across formats is WYSIWYG. Files are created without the dependence on X11 or other external programs. This device supports alpha channel (semi-transparent drawing) and resulting images can contain transparent and semi-transparent regions. It is ideal for use in server environemnts (file output) and as a replacement for other devices that don't have Cairo's capabilities such as alpha support or anti-aliasing. Backends are modular such that any subset of backends is supported.
License | GPL version 2
SystemRequirements | cairo (>= 1.2 http://www.cairographics.org/)
URL | http://www.rforge.net/Cairo/
Built | R 2.5.0; i486-pc-linux-gnu; 2007-06-26 16:04:52; unix

## Hmisc

Package | Hmisc
Version | 3.4-2
Date | 2007-5-02
Title | Harrell Miscellaneous
Author | Frank E Harrell Jr <f.harrell_at_vanderbilt.edu>, with contributions from many other users.
Maintainer | Charles Dupont <charles.dupont_at_vanderbilt.edu>
Depends | R (>= 2.4.0), methods
Imports | lattice, cluster
Suggests | lattice, grid, nnet, foreign, survival, chron, acepack, TeachingDemos, Design, cluster
Description | The Hmisc library contains many functions useful for data analysis, high-level graphics, utility operations, functions for computing sample size and power, importing datasets, imputing missing values, advanced table making, variable clustering, character string manipulation, conversion of S objects to LaTeX code, and recoding variables. Please submit bug reports to 'http://biostat.mc.vanderbilt.edu/trac/Hmisc'.
License | GPL version 2 or newer
URL | http://biostat.mc.vanderbilt.edu/s/Hmisc, http://biostat.mc.vanderbilt.edu/twiki/pub/Main/RS/sintro.pdf, http://biostat.mc.vanderbilt.edu/twiki/pub/Main/StatReport/summary.pdf, http://biostat.mc.vanderbilt.edu/trac/Hmisc
Packaged | Tue Jul 3 10:20:33 2007; dupontct
Built | R 2.5.1; i486-pc-linux-gnu; 2007-08-06 14:10:50; unix

## lattice

Package | lattice
Version | 0.16-2
Date | 2007/07/19
Priority | recommended
Title | Lattice Graphics
Author | Deepayan Sarkar <deepayan.sarkar_at_r-project.org>
Maintainer | Deepayan Sarkar <deepayan.sarkar_at_r-project.org>
Description | Implementation of Trellis Graphics. See ?Lattice for a brief introduction
Depends | R (>= 2.5.0)
Suggests | grid
Imports | grid, grDevices, graphics, stats, utils
Enhances | chron
LazyLoad | yes
LazyData | yes
License | GPL version 2 or later
Packaged | Thu Jul 19 16:59:51 2007; dsarkar
Built | R 2.5.1; i486-pc-linux-gnu; 2007-08-06 14:09:52; unix

## RColorBrewer

Package | RColorBrewer
Version | 0.2-3
Date | 2005-04-16
Title | ColorBrewer palettes
Author | Erich Neuwirth <erich.neuwirth_at_univie.ac.at>
Maintainer | Erich Neuwirth <erich.neuwirth_at_univie.ac.at>
Depends | R (>= 1.7.0)
Description | The packages provides palettes for drawing nice maps shaded according to a variable.
License | Apache-Style Software License
Packaged | Sun Apr 17 11:31:50 2005; neuwirth
Built | R 2.5.0; ; 2007-06-25 16:56:52; unix

## xtable

Package | xtable
Version | 1.4-6
Date | 2007/05/21
Title | Export tables to LaTeX or HTML
Author | David B. Dahl <dahl_at_stat.tamu.edu> with contributions from many others
Maintainer | David B. Dahl <dahl_at_stat.tamu.edu>
Description | Coerce data to LaTeX and HTML tables
Depends |
License | GPL version 2 or later
Packaged | Mon May 21 10:51:03 2007; dahl
Built | R 2.5.1; ; 2007-07-24 10:50:18; unix

## brew

Package | brew
Type | Package
Title | Templating Framework for Report Generation
Version | 0.1-2
Date | 2007-04-16
Author | Jeffrey Horner
Maintainer | Jeffrey Horner <jeff.horner_at_vanderbilt.edu>
Description | brew implements a templating framework for mixing text and R code for report generation. brew template syntax is similar to PHP, Ruby's erb module, Java Server Pages, and Python's psp module.
License | GPL 2.0
Built | R 2.5.1; ; 2007-08-20 15:33:15; unix

## mapdata

Package | mapdata
Title | Extra Map Databases
Version | 2.0-17
Date | 2005-12-20
Author | Original S code by Richard A. Becker and Allan R. Wilks. R version by Ray Brownrigg <Ray.Brownrigg_at_mcs.vuw.ac.nz>
Depends | R (>= 1.7.0), maps (>= 2.0-7)
Description | Supplement to maps package, providing the larger and/or higher-resolution databases.
License | GPL2
Maintainer | Ray Brownrigg <Ray.Brownrigg_at_mcs.vuw.ac.nz>
Packaged | Tue Dec 20 22:29:07 2005; ray
Built | R 2.2.1; i486-pc-linux-gnu; 2006-01-12 03:10:12; unix

## mapproj

Package | mapproj
Title | Map Projections
Version | 1.1-7.1
Date | 2005-04-26
Author | Doug McIlroy. Packaged for R by Ray Brownrigg and Thomas P Minka.
Description | Converts latitude/longitude into projected coordinates.
Depends | maps
License | Distribution and use for non-commercial purposes only.
Maintainer | Thomas P Minka <tpminka_at_media.mit.edu>
Packaged | Tue Apr 26 11:03:59 2005; hornik
Built | R 2.1.0; i386-pc-linux-gnu; 2005-06-02 17:18:58; unix

## maps

Package | maps
Title | Draw Geographical Maps
Version | 2.0-32
Date | 2006-09-26
Author | Original S code by Richard A. Becker and Allan R. Wilks. R version by Ray Brownrigg <Ray.Brownrigg_at_mcs.vuw.ac.nz> Enhancements by Thomas P Minka <surname_at_stat.cmu.edu>
Description | Display of maps. Projection code and larger maps are in separate packages (mapproj and mapdata).
Depends | R (>= 1.7.0)
Suggests | mapproj
License | GPL2
Maintainer | Ray Brownrigg <Ray.Brownrigg_at_mcs.vuw.ac.nz>
Packaged | Tue Sep 26 15:24:36 2006; ray
Built | R 2.3.1; i486-pc-linux-gnu; 2006-11-10 03:07:02; unix

## base

Package | base
Version | 2.5.1
Priority | base
Title | The R Base Package
Author | R Development Core Team and contributors worldwide
Maintainer | R Core Team <R-core_at_r-project.org>
Description | Base R functions
License | GPL Version 2 or later.
Built | R 2.5.1; ; Thu Jul 19 14:31:13 EDT 2007; unix

## cluster

Package | cluster
Version | 1.11.7
Date | 2007-06-05
Priority | recommended
Author | Martin Maechler, based on S original by Peter Rousseeuw <rousse_at_uia.ua.ac.be>, Anja.Struyf_at_uia.ua.ac.be and Mia.Hubert_at_uia.ua.ac.be, and initial R port by Kurt.Hornik_at_R-project.org
Maintainer | Martin Maechler <maechler_at_stat.math.ethz.ch>
Title | Cluster Analysis Extended Rousseeuw et al.
Description | Cluster Analysis, extended original from Peter Rousseeuw, Anja Struyf and Mia Hubert.
Depends | R (>= 2.2.1), stats, graphics, utils
LazyLoad | yes
LazyData | yes
License | GPL version 2 or later
Packaged | Tue Jun 5 14:44:06 2007; maechler
Built | R 2.5.0; i486-pc-linux-gnu; 2007-06-06 12:10:01; unix

## datasets

Package | datasets
Version | 2.5.1
Priority | base
Title | The R Datasets Package
Author | R Development Core Team and contributors worldwide
Maintainer | R Core Team <R-core_at_r-project.org>
Description | Base R datasets
License | GPL Version 2 or later.
Built | R 2.5.1; ; 2007-07-19 14:31:18; unix

## graphics

Package | graphics
Version | 2.5.1
Priority | base
Title | The R Graphics Package
Author | R Development Core Team and contributors worldwide
Maintainer | R Core Team <R-core_at_r-project.org>
Description | R functions for base graphics
Imports | grDevices
License | GPL Version 2 or later.
Built | R 2.5.1; ; 2007-07-19 14:31:16; unix

## grDevices

Package | grDevices
Version | 2.5.1
Priority | base
Title | The R Graphics Devices and Support for Colours and Fonts
Author | R Development Core Team and contributors worldwide
Maintainer | R Core Team <R-core_at_r-project.org>
Description | Graphics devices and support for base and grid graphics
License | GPL Version 2 or later.
Built | R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:15; unix

## grid

Package | grid
Version | 2.5.1
Priority | base
Title | The Grid Graphics Package
Author | Paul Murrell <paul_at_stat.auckland.ac.nz>
Maintainer | R Core Team <R-core_at_r-project.org>
Description | A rewrite of the graphics layout capabilities, plus some support for interaction
Imports | grDevices
Suggests | lattice
License | GPL Version 2 or later.
Built | R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:21; unix

## methods

Package | methods
Version | 2.5.1
Priority | base
Imports | utils
Title | Formal Methods and Classes
Author | R Development Core Team
Maintainer | R Core Team <R-core_at_r-project.org>
Description | Formally defined methods and classes for R objects, plus other programming tools, as described in the reference
References | ``Programming with Data'' (1998), John M. Chambers, Springer NY. http://www.omegahat.org/RSMethods/Intro.ps and .../Intro.pdf
License | GPL Version 2 or later.
Built | R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:21; unix

## splines

Package | splines
Version | 2.5.1
Priority | base
Imports | graphics, stats
Title | Regression Spline Functions and Classes
Author | Douglas M. Bates <bates_at_stat.wisc.edu> and William N. Venables <Bill.Venables_at_cmis.csiro.au>
Maintainer | R Core Team <R-core_at_r-project.org>
Description | Regression spline functions and classes
License | GPL Version 2 or later.
Built | R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:22; unix

## stats

Package | stats
Version | 2.5.1
Priority | base
Title | The R Stats Package
Author | R Development Core Team and contributors worldwide
Maintainer | R Core Team <R-core_at_r-project.org>
Description | R statistical functions
License | GPL Version 2 or later.
Built | R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:17; unix

## stats4

Package | stats4
Title | Statistical Functions using S4 Classes
Version | 2.5.1
Priority | base
Author | R Development Core Team and contributors worldwide
Description | Statistical Functions using S4 classes
Maintainer | R Core Team <R-core_at_r-project.org>
Depends | graphics, stats, methods
SaveImage | yes
License | GPL Version 2 or later.
Built | R 2.5.1; ; 2007-07-19 14:31:23; unix

## tcltk

Package | tcltk
Version | 2.5.1
Priority | base
Title | Tcl/Tk Interface
Author | R Development Core Team
Maintainer | R Core Team <R-core_at_r-project.org>
Description | Interface and language bindings to Tcl/Tk GUI elements
License | GPL Version 2 or later.
Built | R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:23; unix

## tools

Package | tools
Version | 2.5.1
Priority | base
Title | Tools for Package Development
Author | Kurt Hornik and Friedrich Leisch
Maintainer | R Core Team <R-core_at_r-project.org>
Description | Tools for package development, administration and documentation
License | GPL Version 2 or later.
Built | R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:14; unix

## utils

Package | utils
Version | 2.5.1
Priority | base
Title | The R Utils Package
Author | R Development Core Team and contributors worldwide
Maintainer | R Core Team <R-core_at_r-project.org>
Description | R utility functions
License | GPL Version 2 or later.
Built | R 2.5.1; ; 2007-07-19 14:31:15; unix