bio3d-package	bio3d.package
.print.fasta.ali	print.fasta
aa.index	aa.index
aa.table	aa.table
aa123	aa123
aa2index	aa2index
aa2mass	aa2mass
aa321	aa123
aanma	aanma.pdb
aanma.pdb	aanma.pdb
aanma.pdbs	aanma.pdbs
aln2html	aln2html
amsm.xyz	geostas
angle.xyz	angle.xyz
annotation	example.data
as.fasta	as.fasta
as.pdb	as.pdb
as.pdb.default	as.pdb
as.pdb.mol2	as.pdb
as.pdb.prmtop	as.pdb
as.select	as.select
as.xyz	is.xyz
atom.index	atom.index
atom.select	atom.select
atom.select.mol2	atom.select
atom.select.pdb	atom.select
atom.select.pdbs	atom.select
atom.select.prmtop	atom.select
atom2ele	atom2ele
atom2ele.default	atom2ele
atom2ele.pdb	atom2ele
atom2mass	atom2mass
atom2mass.default	atom2mass
atom2mass.pdb	atom2mass
atom2xyz	atom2xyz
basename.pdb	basename.pdb
bhattacharyya	bhattacharyya
bhattacharyya.array	bhattacharyya
bhattacharyya.enma	bhattacharyya
bhattacharyya.matrix	bhattacharyya
bhattacharyya.nma	bhattacharyya
bhattacharyya.pca	bhattacharyya
binding.site	binding.site
bio3d	bio3d.package
biounit	biounit
blast.pdb	blast.pdb
bounds	bounds
bounds.sse	bounds.sse
build.hessian	nma.pdb
bwr.colors	bwr.colors
cat.pdb	cat.pdb
chain.pdb	chain.pdb
check.utility	check.utility
clean.pdb	clean.pdb
cmap	cmap
cmap.default	cmap
cmap.pdb	cmap
cmap.xyz	cmap
cna	cna
cna.dccm	cna
cna.ensmb	cna
cnapath	cnapath
com	com
com.pdb	com
com.xyz	com
combine.select	combine.select
community.aln	community.aln
community.tree	community.tree
consensus	consensus
conserv	conserv
convert.pdb	convert.pdb
core	example.data
core.cmap	core.cmap
core.find	core.find
core.find.default	core.find
core.find.pdb	core.find
core.find.pdbs	core.find
cov.enma	cov.nma
cov.nma	cov.nma
covsoverlap	covsoverlap
covsoverlap.enma	covsoverlap
covsoverlap.nma	covsoverlap
dccm	dccm
dccm.egnm	dccm.gnm
dccm.enma	dccm.enma
dccm.gnm	dccm.gnm
dccm.nma	dccm.nma
dccm.pca	dccm.pca
dccm.xyz	dccm.xyz
deformation.nma	deformation.nma
diag.ind	diag.ind
difference.vector	difference.vector
dist.xyz	dist.xyz
dm	dm
dm.pdb	dm
dm.pdbs	dm
dm.xyz	dm
dssp	dssp
dssp.pdb	dssp
dssp.pdbs	dssp
dssp.xyz	dssp
elements	elements
entropy	entropy
example.data	example.data
ff.aaenm	load.enmff
ff.aaenm2	load.enmff
ff.anm	load.enmff
ff.calpha	load.enmff
ff.pfanm	load.enmff
ff.reach	load.enmff
ff.sdenm	load.enmff
filter.cmap	filter.cmap
filter.dccm	filter.dccm
filter.identity	filter.identity
filter.rmsd	filter.rmsd
fit.xyz	fit.xyz
fluct.nma	fluct.nma
formula2mass	formula2mass
gap.inspect	gap.inspect
geostas	geostas
geostas.default	geostas
geostas.enma	geostas
geostas.nma	geostas
geostas.pdb	geostas
geostas.pdbs	geostas
geostas.xyz	geostas
get.blast	blast.pdb
get.pdb	get.pdb
get.seq	get.seq
gnm	gnm
gnm.pdb	gnm
gnm.pdbs	gnm
hclustplot	hclustplot
hivp	example.data
hmmer	hmmer
identify.cna	identify.cna
inner.prod	inner.prod
inspect.connectivity	inspect.connectivity
is.gap	is.gap
is.mol2	is.mol2
is.pdb	is.pdb
is.pdbs	is.pdb
is.select	is.select
is.xyz	is.xyz
kinesin	example.data
layout.cna	layout.cna
lbio3d	lbio3d
load.enmff	load.enmff
mask	mask.dccm
mask.dccm	mask.dccm
mktrj	mktrj
mktrj.enma	mktrj
mktrj.nma	mktrj
mktrj.pca	mktrj
mono.colors	bwr.colors
motif.find	motif.find
mustang	mustang
network.amendment	network.amendment
nma	nma
nma.pdb	nma.pdb
nma.pdbs	nma.pdbs
normalize.vector	normalize.vector
orient.pdb	orient.pdb
overlap	overlap
pairwise	pairwise
pca	pca
pca.array	pca.array
pca.pdbs	pca.pdbs
pca.tor	pca.tor
pca.xyz	pca.xyz
pdb.annotate	pdb.annotate
pdb.pfam	pdb.annotate
pdb2aln	pdb2aln
pdb2aln.ind	pdb2aln.ind
pdb2sse	pdb2sse
pdbaln	pdbaln
pdbfit	pdbfit
pdbfit.pdb	pdbfit
pdbfit.pdbs	pdbfit
pdbs	example.data
pdbs2pdb	pdbs2pdb
pdbs2sse	pdbs2sse
pdbseq	pdbseq
pdbsplit	pdbsplit
pfam	pfam
plot.bio3d	plot.bio3d
plot.blast	blast.pdb
plot.cmap	plot.cmap
plot.cna	plot.cna
plot.core	plot.core
plot.dccm	plot.dccm
plot.dmat	plot.dmat
plot.enma	plot.enma
plot.fasta	plot.fasta
plot.fluct	plot.fluct
plot.geostas	plot.geostas
plot.hmmer	plot.hmmer
plot.matrix.loadings	plot.matrix.loadings
plot.nma	plot.nma
plot.pca	plot.pca
plot.pca.loadings	plot.pca.loadings
plot.pca.score	plot.pca
plot.pca.scree	plot.pca
plot.rmsip	plot.rmsip
plotb3	plot.bio3d
print.cna	print.cna
print.cnapath	cnapath
print.core	print.core
print.enma	nma.pdbs
print.fasta	print.fasta
print.geostas	geostas
print.mol2	read.mol2
print.nma	nma.pdb
print.pca	pca.xyz
print.pdb	read.pdb
print.prmtop	read.prmtop
print.rle2	rle2
print.select	atom.select
print.sse	dssp
print.xyz	print.xyz
project.pca	project.pca
prune.cna	prune.cna
pymol	pymol
pymol.dccm	pymol
pymol.modes	pymol
pymol.nma	pymol
pymol.pca	pymol
pymol.pdbs	pymol
read.all	read.all
read.cif	read.cif
read.crd	read.crd
read.crd.amber	read.crd.amber
read.crd.charmm	read.crd.charmm
read.dcd	read.dcd
read.fasta	read.fasta
read.fasta.pdb	read.fasta.pdb
read.mol2	read.mol2
read.ncdf	read.ncdf
read.pdb	read.pdb
read.pdb2	read.pdb
read.pdcBD	read.pdcBD
read.pqr	read.pqr
read.prmtop	read.prmtop
rgyr	rgyr
rle2	rle2
rmsd	rmsd
rmsf	rmsf
rmsip	rmsip
rmsip.default	rmsip
rmsip.enma	rmsip
rot.lsq	fit.xyz
rtb	aanma.pdb
sdENM	sdENM
seq2aln	seq2aln
seqaln	seqaln
seqaln.pair	seqaln.pair
seqbind	seqbind
seqidentity	seqidentity
setup.ncore	setup.ncore
sip	sip
sip.default	sip
sip.enma	sip
sip.nma	sip
sse.bridges	sse.bridges
store.atom	store.atom
stride	dssp
struct.aln	struct.aln
summary.cna	print.cna
summary.cnapath	cnapath
summary.pdb	read.pdb
torsion.pdb	torsion.pdb
torsion.xyz	torsion.xyz
transducin	example.data
trim	trim.pdb
trim.mol2	trim.mol2
trim.pdb	trim.pdb
trim.pdbs	trim.pdbs
trim.xyz	trim.xyz
unbound	unbound
uniprot	uniprot
var.pdbs	var.xyz
var.xyz	var.xyz
vec2resno	vec2resno
vmd	vmd.cna
vmd.cna	vmd.cna
vmd.cnapath	vmd.cna
vmd_colors	vmd_colors
wrap.tor	wrap.tor
write.crd	write.crd
write.fasta	write.fasta
write.mol2	write.mol2
write.ncdf	write.ncdf
write.pdb	write.pdb
write.pir	write.pir
write.pqr	write.pqr
xyz2atom	atom2xyz
xyz2z.pca	project.pca
z2xyz.pca	project.pca
