R: Overlapping Heatmap

heatmapBC {biclust} | R Documentation

## Overlapping Heatmap

### Description

Other than `drawHeatmap` this function plots all or a chosen number of bicluster in one plot even if they were overlapping.

### Usage

    heatmapBC(x, bicResult, number = 0, local = FALSE, order = FALSE,
              axes = FALSE, outside = FALSE, zlim = c(min(x), max(x)), ...)

### Arguments

`x` | The data matrix where the bicluster is to be drawn.
`bicResult` | BiclustResult object with a bicluster result set.
`number` | Number of bicluster to be drawn from the result set 'bicResult'. If the default 0 is chosen all bicluster of the bicResult are drawn.
`local` | If TRUE, only rows and columns of the bicluster were drawn.
`order` | If TRUE, rows and columns are ordered by there values.
`axes` | Argument passed to `image()`
`outside` | Boxes were drawn for overlapping
`zlim` | Argument passed to `image()`
`...` | Additional plot options

### Details

Overlap plotting only works for two neighbor bicluster defined by the order in the number slot.

### Author(s)

Sebastian Kaiser

### See Also

`drawHeatmap`,`parallelCoordinates`

### Examples

      set.seed(1234)
      data(BicatYeast)
      resplaid <- biclust(BicatYeast, BCPlaid(), verbose = FALSE)
      heatmapBC(x = BicatYeast, bicResult = resplaid)

[Package biclust version 2.0.2 Index]