R: The biclust Method

biclust {biclust} | R Documentation

## The biclust Method

### Description

The function `biclust` is the main function of the package. It calculates the bicluster in a data matrix using the algorithm specified in the method-argument. Currently the package contains 5 different methods for the use in `biclust`. For each algorithm see the class help files for further details. For some algorithms preproccessing is necessary, e.g. `BCBimax` only runs with a logical matrix.

### Usage

    ## S4 method for signature 'matrix,BiclustMethod'
    biclust(x,method,...)

    ## S4 method for signature 'matrix,character'
    biclust(x,method,...)

### Arguments

`x` | Data matrix.
`method` | An object of class `"BiclustMethod"` or a character string with the name of a `"BiclustMethod"`-class.
`...` | Additional Parameters of the `"BiclustMethod"`

### Value

Returns an object of class `Biclust`.

### Author(s)

Sebastian Kaiser sebastian.kaiser@stat.uni-muenchen.de

### See Also

`Biclust-class`, `BCCC`, `BCXmotifs`, `BCPlaid`, `BCSpectral`, `BCBimax`, `BCQuest`, `BiclustMethod-class`

### Examples

    test <- matrix(rbinom(400, 50, 0.4), 20, 20)
    res1 <- biclust(test, method=BCCC(), delta=1.5,  alpha=1, number=10)

[Package biclust version 2.0.2 Index]