| pgraph {BDgraph} | R Documentation |
Provides the estimated posterior probabilities for the most likely graphs or a specific graph.
pgraph( bdgraph.obj, number.g = 4, adj = NULL )
bdgraph.obj |
object of |
number.g |
number of graphs with the highest posterior probabilities to be shown.
This option is ignored if |
adj |
adjacency matrix corresponding to a graph structure. It is an upper triangular matrix in which
a_{ij}=1 if there is a link between notes i and j, otherwise a_{ij}=0.
It also can be an object of |
selected_g |
adjacency matrices which corresponding to the graphs with the highest posterior probabilities. |
prob_g |
vector of the posterior probabilities of the graphs corresponding to |
Reza Mohammadi a.mohammadi@uva.nl and Ernst Wit
Mohammadi, R. and Wit, E. C. (2019). BDgraph: An R Package for Bayesian Structure Learning in Graphical Models, Journal of Statistical Software, 89(3):1-30, doi: 10.18637/jss.v089.i03
Mohammadi, A. and Wit, E. C. (2015). Bayesian Structure Learning in Sparse Gaussian Graphical Models, Bayesian Analysis, 10(1):109-138, doi: 10.1214/14-BA889
Mohammadi, R., Massam, H. and Letac, G. (2021). Accelerating Bayesian Structure Learning in Sparse Gaussian Graphical Models, Journal of the American Statistical Association, doi: 10.1080/01621459.2021.1996377
Dobra, A. and Mohammadi, R. (2018). Loglinear Model Selection and Human Mobility, Annals of Applied Statistics, 12(2):815-845, doi: 10.1214/18-AOAS1164
Mohammadi, A. et al (2017). Bayesian modelling of Dupuytren disease by using Gaussian copula graphical models, Journal of the Royal Statistical Society: Series C, 66(3):629-645, doi: 10.1111/rssc.12171
## Not run: # Generating multivariate normal data from a 'random' graph data.sim <- bdgraph.sim( n = 50, p = 6, size = 6, vis = TRUE ) bdgraph.obj <- bdgraph( data = data.sim, save = TRUE ) # Estimated posterior probability of the true graph pgraph( bdgraph.obj, adj = data.sim ) # Estimated posterior probability of first and second graphs with highest probabilities pgraph( bdgraph.obj, number.g = 2 ) ## End(Not run)