R: Trace plot of graph size

traceplot {BDgraph} | R Documentation

## Trace plot of graph size

### Description

Trace plot for graph size for the objects of `S3` class `"bdgraph"`, from function `bdgraph`. It is a tool for monitoring the convergence of the sampling algorithms, BDMCMC and RJMCMC.

### Usage

     traceplot ( bdgraph.obj, acf = FALSE, pacf = FALSE, main = NULL, ... )

### Arguments

`bdgraph.obj` | An object of `S3` class `"bdgraph"`, from function `bdgraph`. It also can be an object of `S3` class `"ssgraph"`, from the function `ssgraph` of `R` package `ssgraph`.
`acf` | Visualize the autocorrelation functions for graph size.
`pacf` | Visualize the partial autocorrelations for graph size.
`main` | Graphical parameter (see plot).
`...` | System reserved (no specific usage).

### Author(s)

Reza Mohammadi a.mohammadi@uva.nl and Ernst Wit

### References

Mohammadi, R. and Wit, E. C. (2019). BDgraph: An `R` Package for Bayesian Structure Learning in Graphical Models, Journal of Statistical Software, 89(3):1-30

Mohammadi, A. and Wit, E. C. (2015). Bayesian Structure Learning in Sparse Gaussian Graphical Models, Bayesian Analysis, 10(1):109-138

Dobra, A. and Mohammadi, R. (2018). Loglinear Model Selection and Human Mobility, Annals of Applied Statistics, 12(2):815-845

Mohammadi, A. et al (2017). Bayesian modelling of Dupuytren disease by using Gaussian copula graphical models, Journal of the Royal Statistical Society: Series C, 66(3):629-645

Mohammadi, A. and Dobra, A. (2017). The `R` Package BDgraph for Bayesian Structure Learning in Graphical Models, ISBA Bulletin, 24(4):11-16

### See Also

`plotcoda`, `bdgraph`, `bdgraph.mpl`

### Examples

    ## Not run:
    # Generating multivariate normal data from a 'random' graph
    data.sim <- bdgraph.sim( n = 50, p = 6, size = 7, vis = TRUE )

    bdgraph.obj <- bdgraph( data = data.sim, iter = 10000, burnin = 0, save = TRUE )

    traceplot( bdgraph.obj )

    traceplot( bdgraph.obj, acf = TRUE, pacf = TRUE )

    ## End(Not run)

[Package BDgraph version 2.62 Index]