| BactDating {BactDating} | R Documentation |
BactDating is a R package to perform Bayesian inference of ancestral dates on bacterial phylogenetic trees.
The main functions of the package are:
initRoot to initiate the root of an unrooted tree in a way that maximises the correlation between sampling dates and root-to-tip distances.
roottotip to perform a linear regression analysis between sampling dates and root-to-tip distances.
bactdate to perform Bayesian inference of ancestral dates on a phylogenetic tree.
Xavier Didelot xavier.didelot@gmail.com
Didelot et al (submitted). Bayesian inference of ancestral dates on bacterial phylogenetic trees.
https://github.com/xavierdidelot/BactDating