R: Diagnostic plots for ash object

plot_diagnostic {ashr} | R Documentation

## Diagnostic plots for ash object

### Description

Generate several plots to diagnose the fitness of ASH on the data

### Usage

    plot_diagnostic(
      x,
      plot.it = TRUE,
      sebetahat.tol = 0.001,
      plot.hist,
      xmin,
      xmax,
      breaks = "Sturges",
      alpha = 0.01,
      pch = 19,
      cex = 0.25
    )

### Arguments

`x` | the fitted ash object
`plot.it` | logical. whether to plot the diagnostic result
`sebetahat.tol` | tolerance to test the equality of betahat
`plot.hist` | logical. whether to plot the histogram of betahat when sebetahat is not constant
`xmin, xmax` | range of the histogram of betahat to be plotted
`breaks` | histograms parameter (see `hist`)
`alpha` | error level for the de-trended diagnostic plot
`pch, cex` | plot parameters for dots

### Details

None.

[Package ashr version 2.2-54 Index]