ash                     Adaptive Shrinkage
ash_pois                Performs adaptive shrinkage on Poisson data
ashci                   Credible Interval Computation for the ash
                        object
ashr                    ashr
calc_logLR              Compute loglikelihood ratio for data from ash
                        fit
calc_loglik             Compute loglikelihood for data from ash fit
calc_mixmean            Generic function of calculating the overall
                        mean of the mixture
calc_mixsd              Generic function of calculating the overall
                        standard deviation of the mixture
calc_null_loglik        Compute loglikelihood for data under null that
                        all beta are 0
calc_null_vloglik       Compute vector of loglikelihood for data under
                        null that all beta are 0
calc_vlogLR             Compute vector of loglikelihood ratio for data
                        from ash fit
calc_vloglik            Compute vector of loglikelihood for data from
                        ash fit
cdf.ash                 cdf method for ash object
cdf_conv                cdf_conv
cdf_post                cdf_post
comp_cdf                Generic function of computing the cdf for each
                        component
comp_cdf_conv           comp_cdf_conv
comp_cdf_conv.normalmix
                        comp_cdf_conv.normalmix
comp_cdf_conv.unimix    cdf of convolution of each component of a unif
                        mixture
comp_cdf_post           comp_cdf_post
comp_dens               Generic function of calculating the component
                        densities of the mixture
comp_dens_conv          comp_dens_conv
comp_dens_conv.normalmix
                        comp_dens_conv.normalmix
comp_dens_conv.unimix   density of convolution of each component of a
                        unif mixture
comp_mean               Generic function of calculating the first
                        moment of components of the mixture
comp_mean.normalmix     comp_mean.normalmix
comp_mean.tnormalmix    comp_mean.tnormalmix
comp_mean2              Generic function of calculating the second
                        moment of components of the mixture
comp_postmean           comp_postmean
comp_postmean2          comp_postmean2
comp_postprob           comp_postprob
comp_postsd             comp_postsd
comp_sd                 Generic function to extract the standard
                        deviations of components of the mixture
comp_sd.normalmix       comp_sd.normalmix
comp_sd.tnormalmix      comp_sd.normalmix
compute_lfsr            Function to compute the local false sign rate
cxxMixSquarem           Brief description of function.
dens                    Find density at y, a generic function
dens_conv               dens_conv
dlogf                   The log-F distribution
estimate_mixprop        Estimate mixture proportions of a mixture g
                        given noisy (error-prone) data from that
                        mixture.
gen_etruncFUN           gen_etruncFUN
get_density             Density method for ash object
get_lfsr                Return lfsr from an ash object
get_post_sample         Sample from posterior
igmix                   Constructor for igmix class
lik_binom               Likelihood object for Binomial error
                        distribution
lik_logF                Likelihood object for logF error distribution
lik_normal              Likelihood object for normal error distribution
lik_normalmix           Likelihood object for normal mixture error
                        distribution
lik_pois                Likelihood object for Poisson error
                        distribution
lik_t                   Likelihood object for t error distribution
log_comp_dens_conv      log_comp_dens_conv
log_comp_dens_conv.normalmix
                        log_comp_dens_conv.normalmix
log_comp_dens_conv.unimix
                        log density of convolution of each component of
                        a unif mixture
loglik_conv             loglik_conv
loglik_conv.default     loglik_conv.default
mixEM                   Estimate mixture proportions of a mixture model
                        by EM algorithm
mixIP                   Estimate mixture proportions of a mixture model
                        by Interior Point method
mixSQP                  Estimate mixture proportions of a mixture model
                        using mix-SQP algorithm.
mixVBEM                 Estimate posterior distribution on mixture
                        proportions of a mixture model by a Variational
                        Bayes EM algorithm
mixcdf                  mixcdf
mixcdf.default          mixcdf.default
mixmean2                Generic function of calculating the overall
                        second moment of the mixture
mixprop                 Generic function of extracting the mixture
                        proportions
my_e2truncbeta          second moment of truncated Beta distribution
my_e2truncgamma         second moment of truncated gamma distribution
my_e2truncnorm          Expected Squared Value of Truncated Normal
my_e2trunct             my_e2trunct
my_etruncbeta           mean of truncated Beta distribution
my_etruncgamma          mean of truncated gamma distribution
my_etrunclogf           my_etrunclogf
my_etruncnorm           Expected Value of Truncated Normal
my_etrunct              my_etrunct
my_vtruncnorm           Variance of Truncated Normal
ncomp                   ncomp
ncomp.default           ncomp.default
normalmix               Constructor for normalmix class
pcdf_post               pcdf_post
plogf                   The log-F distribution
plot.ash                Plot method for ash object
plot_diagnostic         Diagnostic plots for ash object
pm_on_zero              Generic function to extract which components of
                        mixture are point mass on 0
post_sample             post_sample
post_sample.normalmix   post_sample.normalmix
post_sample.unimix      post_sample.unimix
posterior_dist          Compute Posterior
postmean                postmean
postmean2               postmean2
postsd                  postsd
print.ash               Print method for ash object
prune                   prune
qval.from.lfdr          Function to compute q values from local false
                        discovery rates
set_data                Takes raw data and sets up data object for use
                        by ash
summary.ash             Summary method for ash object
tnormalmix              Constructor for tnormalmix class
unimix                  Constructor for unimix class
vcdf_post               vcdf_post
w_mixEM                 Estimate mixture proportions of a mixture model
                        by EM algorithm (weighted version)
