R: A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated]

# A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated]

## Documentation for package ‘aroma.apd’ version 0.6.0

- DESCRIPTION file.
- Package NEWS.

## Help Pages

aroma.apd-package | Package aroma.apd
aroma.apd | Package aroma.apd
cdfToApdMap | Generates an APD read map file from an Affymetrix CDF file
cdfToApdMap.default | Generates an APD read map file from an Affymetrix CDF file
celToApd | Generates an APD file from an Affymetrix CEL file
celToApd.default | Generates an APD file from an Affymetrix CEL file
createApd | Creates an Affymetrix probe data (APD) file
createApd.default | Creates an Affymetrix probe data (APD) file
findApdMap | Search for APD map files in multiple directories
findApdMap.default | Search for APD map files in multiple directories
gtypeCelToPQ | Function to immitate Affymetrix' gtype\_cel\_to\_pq software
gtypeCelToPQ.default | Function to immitate Affymetrix' gtype\_cel\_to\_pq software
readApd | Reads an Affymetrix probe data (APD) file
readApd.default | Reads an Affymetrix probe data (APD) file
readApdHeader | Reads the header of an Affymetrix probe data (APD) file
readApdHeader.default | Reads the header of an Affymetrix probe data (APD) file
readApdMap | Reads an APD probe map file
readApdMap.default | Reads an APD probe map file
readApdRectangle | Reads a spatial subset of probe-level data from Affymetrix APD files
readApdRectangle.default | Reads a spatial subset of probe-level data from Affymetrix APD files
readApdUnits | Reads Affymetrix probe data (APD) as units (probesets)
readApdUnits.default | Reads Affymetrix probe data (APD) as units (probesets)
updateApd | Updates an Affymetrix probe data (APD) file
updateApd.default | Updates an Affymetrix probe data (APD) file
updateApdHeader | Updates the header of an Affymetrix probe data (APD) file
updateApdHeader.default | Updates the header of an Affymetrix probe data (APD) file
updateApdUnits | Updates an Affymetrix probe data (APD) file by units (probesets)
updateApdUnits.default | Updates an Affymetrix probe data (APD) file by units (probesets)
writeApd | Writes an APD probe data file
writeApd.default | Writes an APD probe data file
writeApdMap | Writes an APD probe map file
writeApdMap.default | Writes an APD probe map file