R: Phylogenetic Tree of 193 HIV-1 Sequences

hivtree {ape} | R Documentation

## Phylogenetic Tree of 193 HIV-1 Sequences

### Description

This data set describes an estimated clock-like phylogeny of 193 HIV-1 group M sequences sampled in the Democratic Republic of Congo.

### Usage

    data(hivtree.newick)
    data(hivtree.table)

### Format

`hivtree.newick` is a string with the tree in Newick format. The data frame `hivtree.table` contains the corresponding internode distances.

### Source

This is a data example from Strimmer and Pybus (2001).

### References

Strimmer, K. and Pybus, O. G. (2001) Exploring the demographic history of DNA sequences using the generalized skyline plot. Molecular Biology and Evolution, 18, 2298–2305.

### See Also

`coalescent.intervals`, `collapsed.intervals`

[Package ape version 5.6-2 Index]