R: Alignment Explorer With Multiple Devices

alex {ape} | R Documentation

## Alignment Explorer With Multiple Devices

### Description

This function helps to explore DNA alignments by zooming in. The user clicks twice defining the opposite corners of the portion which is extracted and drawned on a new window.

### Usage

    alex(x, ...)

### Arguments

`x` | an object of class `"DNAbin"`.
`...` | further arguments to pass to `image.DNAbin`.

### Details

This function works with a DNA alignment (freshly) plotted on an interactive graphical device (i.e., not a file) with `image`. After calling `alex`, the user clicks twice defining a rectangle in the alignment, then this portion of the alignment is extacted and plotted on a new window. The user can click as many times on the alignment. The process is stopped by a right-click. If the user clicks twice outside the alignment, a message “Try again!” is printed.

Each time `alex` is called, the alignment is plotted on a new window without closing or deleting those possibly already plotted.

In all cases, the device where `x` is plotted is the active window after the operation. It should not be closed during the whole process.

### Value

NULL

### Author(s)

Emmanuel Paradis

### See Also

`image.DNAbin`, `trex`, `alview`

### Examples

    ## Not run:
    data(woodmouse)
    image(woodmouse)
    alex(woodmouse)

    ## End(Not run)

[Package ape version 4.1 Index]