R: Affinity Propagation Clustering

# Affinity Propagation Clustering

## Documentation for package ‘apcluster’ version 1.4.7

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

apcluster-package | APCluster Package
aggExCluster | Exemplar-based Agglomerative Clustering
aggexcluster | Exemplar-based Agglomerative Clustering
aggExCluster-method | Exemplar-based Agglomerative Clustering
aggExCluster-methods | Exemplar-based Agglomerative Clustering
AggExResult | Class "AggExResult"
aggexresult | Class "AggExResult"
AggExResult-class | Class "AggExResult"
apcluster | Affinity Propagation
apcluster-deprecated | Deprecated functions in package 'apcluster'
apcluster-method | Affinity Propagation
apcluster-methods | Affinity Propagation
apclusterDemo | Affinity Propagation Demo
apclusterK | Affinity Propagation for Pre-defined Number of Clusters
apclusterK-method | Affinity Propagation for Pre-defined Number of Clusters
apclusterK-methods | Affinity Propagation for Pre-defined Number of Clusters
apclusterL | Leveraged Affinity Propagation
apclusterL-method | Leveraged Affinity Propagation
apclusterL-methods | Leveraged Affinity Propagation
APResult | Class "APResult"
apresult | Class "APResult"
APResult-class | Class "APResult"
as.dendrogram | Coercion of cluster hierarchies
as.dendrogram-method | Coercion of cluster hierarchies
as.DenseSimilarityMatrix | Conversions Between Dense and Sparse Similarity Matrices
as.DenseSimilarityMatrix-method | Conversions Between Dense and Sparse Similarity Matrices
as.hclust | Coercion of cluster hierarchies
as.hclust-method | Coercion of cluster hierarchies
as.SparseSimilarityMatrix | Conversions Between Dense and Sparse Similarity Matrices
as.SparseSimilarityMatrix-method | Conversions Between Dense and Sparse Similarity Matrices
as.SparseSimilarityMatrix-methods | Conversions Between Dense and Sparse Similarity Matrices
ch22Promoters | ch22Promoters Data Set
conversions | Conversions Between Dense and Sparse Similarity Matrices
corSimMat | Methods for Computing Similarity Matrices
cutree | Cut Out Clustering Level from Cluster Hierarchy
cutree-method | Cut Out Clustering Level from Cluster Hierarchy
cutree-methods | Cut Out Clustering Level from Cluster Hierarchy
ExClust | Class "ExClust"
exclust | Class "ExClust"
ExClust-class | Class "ExClust"
expSimMat | Methods for Computing Similarity Matrices
heatmap | Plot Heatmap
heatmap-method | Plot Heatmap
heatmap-methods | Plot Heatmap
labels | Generate label vector from clustering result
labels-method | Generate label vector from clustering result
labels-methods | Generate label vector from clustering result
length-method | Class "APResult"
length-method | Class "AggExResult"
length-method | Class "ExClust"
linKernel | Methods for Computing Similarity Matrices
linSimMat | Methods for Computing Similarity Matrices
negDistMat | Methods for Computing Similarity Matrices
plot | Plot Clustering Results
plot-method | Plot Clustering Results
plot-methods | Plot Clustering Results
preferenceRange | Determine Meaningful Ranges for Input Preferences
preferenceRange-method | Determine Meaningful Ranges for Input Preferences
preferenceRange-methods | Determine Meaningful Ranges for Input Preferences
show | Display Clustering Result Objects
show-method | Display Clustering Result Objects
show-methods | Display Clustering Result Objects
similarities | Methods for Computing Similarity Matrices
similarity | Class "APResult"
similarity-method | Class "APResult"
similarity-method | Class "AggExResult"
similarity-method | Class "ExClust"
sort | Sort clusters
sort-method | Sort clusters
sort-methods | Sort clusters
sparseToFull | Deprecated functions in package 'apcluster'
[-method | Class "APResult"
[-method | Class "AggExResult"
[-method | Class "ExClust"
[[-method | Class "APResult"
[[-method | Class "AggExResult"
[[-method | Class "ExClust"