R: S4 class defining a clone

ChangeoClone-class {alakazam} | R Documentation

## S4 class defining a clone

### Description

`ChangeoClone` defines a common data structure for perform lineage recontruction from Change-O data.

### Slots

`data`

  data.frame containing sequences and annotations. Contains the columns `SEQUENCE_ID` and `SEQUENCE`, as well as any additional sequence-specific annotation columns.

`clone`

  string defining the clone identifier.

`germline`

  string containing the germline sequence for the clone.

`v_gene`

  string defining the V segment gene call.

`j_gene`

  string defining the J segment gene call.

`junc_len`

  numeric junction length (nucleotide count).

### See Also

See makeChangeoClone and buildPhylipLineage for use.

[Package alakazam version 0.3.0 Index]