R: Cut tree of consensus

hcut {agricolae} | R Documentation

## Cut tree of consensus

### Description

It shows dendrogram of a consensus of a tree generated by hclust.

### Usage

    hcut(consensus,h,group,col.text="blue",cex.text=1,...)

### Arguments

`consensus` | object consensus
`h` | numeric scalar or vector with heights where the tree should be cut.
`group` | an integer scalar with the desired number of group
`col.text` | color of number consensus
`cex.text` | size of number consensus
`...` | Other parameters of the function plot() in cut()

### Value

hcut Returns a data frame with group memberships and consensus tree.

### Author(s)

F. de Mendiburu

### See Also

`hclust`, `consensus`, `hgroups`

### Examples

    library(agricolae)
    data(pamCIP)
    # only code
    rownames(pamCIP)<-substr(rownames(pamCIP),1,6)
    # groups of clusters
    # output<-consensus(pamCIP,nboot=100)
    # hcut(output,h=0.4,group=5,main="Group 5")
    #
    # hcut(output,h=0.4,group=8,type="t",edgePar=list(lty=1:2,col=2:1),main="group 8"
    # ,col.text="blue",cex.text=1)

[Package agricolae version 1.2-8 Index]