R: Select genotypes of well-represented populations

selPopSize {adegenet} | R Documentation

## Select genotypes of well-represented populations

### Description

The function `selPopSize` checks the sample size of each population in a genind object and keeps only genotypes of populations having a given minimum size.

### Usage

    ## S4 method for signature 'genind'
    selPopSize(x,pop=NULL,nMin=10)

### Arguments

`x` | a genind object
`pop` | a vector of characters or a factor giving the population of each genotype in 'x'. If not provided, seeked from x\$pop.
`nMin` | the minimum sample size for a population to be retained. Samples sizes strictly less than `nMin` will be discarded, those equal to or greater than `nMin` are kept.

### Value

A genind object.

### Author(s)

Thibaut Jombart t.jombart@imperial.ac.uk

### See Also

`seploc`, `repool`

### Examples

    ## Not run:
    data(microbov)

    table(pop(microbov))
    obj <- selPopSize(microbov, n=50)

    obj
    table(pop(obj))

    ## End(Not run)

[Package adegenet version 2.1.4 Index]