R: Microsatellites genotypes of 781 swallowtail butterflies from...

swallowtails {adegenet} | R Documentation

## Microsatellites genotypes of 781 swallowtail butterflies from 40 populations in Alberta and British Columbia, Canada

### Description

This data set gives the genotypes of 781 swallowtail butterflies (Papilio machaon species group) for 10 microsatellites markers. The individuals are divided into 40 populations.

### Format

`swallowtails` is a genind object containing 781 individuals, 10 microsatellite markers, and 40 populations.

### Source

Julian Dupuis (University of Hawaii, USA)

### References

Dupuis, J.R. & Sperling, F.A.H. Hybrid dynamics in a species group of swallowtail butterflies. Journal of Evolutionary Biology, 10, 1932–1951.

### Examples

    ## Not run:
    data(swallowtails)
    swallowtails

    # conducting a DAPC (n.pca determined using xvalDapc, see ??xvalDapc)

    dapc1 <- dapc(swallowtails, n.pca=40, n.da=200)

    # read in swallowtails_loc.csv, which contains "key", "lat", and "lon"
    # columns with column headers (this example contains additional columns
    # containing species identifications, locality descriptions, and COI
    # haplotype clades)

    input_locs <- system.file("files/swallowtails_loc.csv", package = "adegenet")
    loc <- read.csv(input_locs, header = TRUE)

    # generate mvmapper input file, automatically write the output to a csv, and
    # name the output csv "mvMapper_Data.csv"

    out <- export_to_mvmapper(dapc1, loc, write_file = TRUE, out_file = "mvMapper_Data.csv")

    ## End(Not run)

[Package adegenet version 2.1.4 Index]