EH                      Amount of Evolutionary History
PI2newick               Import data files from Phylogenetic
                        Independance Package
RV.rtest                Monte-Carlo Test on the sum of eigenvalues of a
                        co-inertia analysis (in R).
RVdist.randtest         Tests of randomization on the correlation
                        between two distance matrices (in R).
abouheif.eg             Phylogenies and quantitative traits from
                        Abouheif
acacia                  Spatial pattern analysis in plant communities
add.scatter             Add graphics to an existing plot
ade4-deprecated         Deprecated functions in ade4
ade4-package            The ade4 package
aminoacyl               Codon usage
amova                   Analysis of molecular variance
apis108                 Allelic frequencies in ten honeybees
                        populations at eight microsatellites loci
apqe                    Apportionment of Quadratic Entropy
aravo                   Distribution of Alpine plants in Aravo
                        (Valloire, France)
ardeche                 Fauna Table with double (row and column)
                        partitioning
area.plot               Graphical Display of Areas
arrival                 Arrivals at an intensive care unit
as.taxo                 Taxonomy
atlas                   Small Ecological Dataset
atya                    Genetic variability of Cacadors
avijons                 Bird species distribution
avimedi                 Fauna Table for Constrained Ordinations
aviurba                 Ecological Tables Triplet
bacteria                Genomes of 43 Bacteria
banque                  Table of Factors
baran95                 African Estuary Fishes
bca                     Between-Class Analysis
bca.coinertia           Between-class coinertia analysis
bca.rlq                 Between-Class RLQ analysis
bf88                    Cubic Ecological Data
bicenter.wt             Double Weighted Centring
bordeaux                Wine Tasting
bsetal97                Ecological and Biological Traits
buech                   Buech basin
butterfly               Genetics-Ecology-Environment Triple
bwca.dpcoa              Between- and within-class double principal
                        coordinate analysis
cailliez                Transformation to make Euclidean a distance
                        matrix
capitales               Road Distances
carni19                 Phylogeny and quantative trait of carnivora
carni70                 Phylogeny and quantitative traits of carnivora
carniherbi49            Taxonomy, phylogenies and quantitative traits
                        of carnivora and herbivora
casitas                 Enzymatic polymorphism in Mus musculus
chatcat                 Qualitative Weighted Variables
chats                   Pair of Variables
chazeb                  Charolais-Zebus
chevaine                Enzymatic polymorphism in Leuciscus cephalus
chickenk                Veterinary epidemiological study to assess the
                        risk factors for losses in broiler chickens
clementines             Fruit Production
cnc2003                 Frequenting movie theaters in France in 2003
coinertia               Coinertia Analysis
coleo                   Table of Fuzzy Biological Traits
combine.4thcorner       Functions to combine and adjust the outputs
                        3-table methods
corkdist                Tests of randomization between distances
                        applied to 'kdist' objetcs
corvus                  Corvus morphology
costatis                STATIS and Co-Inertia : Analysis of a series of
                        paired ecological tables
costatis.randtest       Monte-Carlo test on a Costatis analysis (in C).
deug                    Exam marks for some students
disc                    Rao's dissimilarity coefficient
discrimin               Linear Discriminant Analysis (descriptive
                        statistic)
discrimin.coa           Discriminant Correspondence Analysis
dist.binary             Computation of Distance Matrices for Binary
                        Data
dist.dudi               Computation of the Distance Matrix from a
                        Statistical Triplet
dist.genet              Genetic distances from gene frequencies
dist.ktab               Mixed-variables coefficient of distance
dist.neig               Computation of the Distance Matrix associated
                        to a Neighbouring Graph
dist.prop               Computation of Distance Matrices of Percentage
                        Data
dist.quant              Computation of Distance Matrices on
                        Quantitative Variables
divc                    Rao's diversity coefficient also called
                        quadratic entropy
divcmax                 Maximal value of Rao's diversity coefficient
                        also called quadratic entropy
dotchart.phylog         Representation of many quantitative variables
                        in front of a phylogenetic tree
dotcircle               Representation of n values on a circle
doubs                   Pair of Ecological Tables
dpcoa                   Double principal coordinate analysis
dudi                    Duality Diagram
dudi.acm                Multiple Correspondence Analysis
dudi.coa                Correspondence Analysis
dudi.dec                Decentred Correspondence Analysis
dudi.fca                Fuzzy Correspondence Analysis and Fuzzy
                        Principal Components Analysis
dudi.hillsmith          Ordination of Tables mixing quantitative
                        variables and factors
dudi.mix                Ordination of Tables mixing quantitative
                        variables and factors
dudi.nsc                Non symmetric correspondence analysis
dudi.pca                Principal Component Analysis
dudi.pco                Principal Coordinates Analysis
dunedata                Dune Meadow Data
ecg                     Electrocardiogram data
ecomor                  Ecomorphological Convergence
elec88                  Electoral Data
escopage                K-tables of wine-tasting
euro123                 Triangular Data
fission                 Fission pattern and heritable morphological
                        traits
foucart                 K-tables Correspondence Analysis with the same
                        rows and the same columns
fourthcorner            Functions to compute the fourth-corner
                        statistic
friday87                Faunistic K-tables
fruits                  Pair of Tables
fuzzygenet              Reading a table of genetic data (diploid
                        individuals)
gearymoran              Moran's I and Geary'c randomization tests for
                        spatial and phylogenetic autocorrelation
genet                   A class of data: tables of populations and
                        alleles
ggtortoises             Microsatellites of Galapagos tortoises
                        populations
granulo                 Granulometric Curves
gridrowcol              Complete regular grid analysis
hdpg                    Genetic Variation In Human Populations
housetasks              Contingency Table
humDNAm                 human mitochondrial DNA restriction data
ichtyo                  Point sampling of fish community
inertia.dudi            Decomposition of inertia (i.e. contributions)
                        in multivariate methods
irishdata               Geary's Irish Data
is.euclid               Is a Distance Matrix Euclidean?
julliot                 Seed dispersal
jv73                    K-tables Multi-Regions
kcponds                 Ponds in a nature reserve
kdist                   the class of objects 'kdist' (K distance
                        matrices)
kdist2ktab              Transformation of K distance matrices (object
                        'kdist') into K Euclidean representations
                        (object 'ktab')
kdisteuclid             a way to obtain Euclidean distance matrices
kplot                   Generic Function for Multiple Graphs in a
                        K-tables Analysis
kplot.foucart           Multiple Graphs for the Foucart's
                        Correspondence Analysis
kplot.mcoa              Multiple Graphs for a Multiple Co-inertia
                        Analysis
kplot.mfa               Multiple Graphs for a Multiple Factorial
                        Analysis
kplot.pta               Multiple Graphs for a Partial Triadic Analysis
kplot.sepan             Multiple Graphs for Separated Analyses in a
                        K-tables
kplot.statis            Multiple Graphs of a STATIS Analysis
krandtest               Class of the Permutation Tests (in C).
ktab                    the class of objects 'ktab' (K-tables)
ktab.data.frame         Creation of K-tables from a data frame
ktab.list.df            Creating a K-tables from a list of data frames.
ktab.list.dudi          Creation of a K-tables from a list of duality
                        diagrams
ktab.match2ktabs        STATIS and Co-Inertia : Analysis of a series of
                        paired ecological tables
ktab.within             Process to go from a Within Analysis to a
                        K-tables
lascaux                 Genetic/Environment and types of variables
lingoes                 Transformation of a Distance Matrix for
                        becoming Euclidean
lizards                 Phylogeny and quantitative traits of lizards
macaca                  Landmarks
macon                   Wine Tasting
macroloire              Assemblages of Macroinvertebrates in the Loire
                        River (France)
mafragh                 Phyto-Ecological Survey
mantel.randtest         Mantel test (correlation between two distance
                        matrices (in C).)
mantel.rtest            Mantel test (correlation between two distance
                        matrices (in R).)
maples                  Phylogeny and quantitative traits of flowers
mariages                Correspondence Analysis Table
mbpcaiv                 Multiblock principal component analysis with
                        instrumental variables
mbpls                   Multiblock partial least squares
mcoa                    Multiple CO-inertia Analysis
mdpcoa                  Multiple Double Principal Coordinate Analysis
meau                    Ecological Data : sites-variables,
                        sites-species, where and when
meaudret                Ecological Data : sites-variables,
                        sites-species, where and when
mfa                     Multiple Factorial Analysis
microsatt               Genetic Relationships between cattle breeds
                        with microsatellites
mjrochet                Phylogeny and quantitative traits of teleos
                        fishes
mld                     Multi Level Decomposition of unidimensional
                        data
mollusc                 Faunistic Communities and Sampling Experiment
monde84                 Global State of the World in 1984
morphosport             Athletes' Morphology
mstree                  Minimal Spanning Tree
multispati              Multivariate spatial analysis
multispati.randtest     Multivariate spatial autocorrelation test (in
                        C)
multispati.rtest        Multivariate spatial autocorrelation test
neig                    Neighbourhood Graphs
newick.eg               Phylogenetic trees in Newick format
newick2phylog           Create phylogeny
niche                   Method to Analyse a pair of tables :
                        Environmental and Faunistic Data
nipals                  Non-linear Iterative Partial Least Squares
                        (NIPALS) algorithm
njplot                  Phylogeny and trait of bacteria
olympic                 Olympic Decathlon
optimEH                 Nee and May's optimizing process
oribatid                Oribatid mite
originality             Originality of a species
orisaved                Maximal or minimal amount of originality saved
                        under optimal conditions
orthobasis              Orthonormal basis for orthonormal transform
orthogram               Orthonormal decomposition of variance
ours                    A table of Qualitative Variables
palm                    Phylogenetic and quantitative traits of
                        amazonian palm trees
pap                     Taxonomy and quantitative traits of carnivora
pcaiv                   Principal component analysis with respect to
                        instrumental variables
pcaivortho              Principal Component Analysis with respect to
                        orthogonal instrumental variables
pcoscaled               Simplified Analysis in Principal Coordinates
pcw                     Distribution of of tropical trees along the
                        Panama canal
perthi02                Contingency Table with a partition in Molecular
                        Biology
phylog                  Phylogeny
piosphere               Plant traits response to grazing
plot.phylog             Plot phylogenies
presid2002              Results of the French presidential elections of
                        2002
print.within            Within-Class Analysis
procella                Phylogeny and quantitative traits of birds
procuste                Simple Procruste Rotation between two sets of
                        points
procuste.randtest       Monte-Carlo Test on the sum of the singular
                        values of a procustean rotation (in C).
procuste.rtest          Monte-Carlo Test on the sum of the singular
                        values of a procustean rotation (in R).
pta                     Partial Triadic Analysis of a K-tables
quasieuclid             Transformation of a distance matrice to a
                        Euclidean one
randEH                  Nee and May's random process
randboot                Bootstrap simulations
randboot.multiblock     Bootstraped simulations for multiblock methods
randtest                Class of the Permutation Tests (in C).
randtest.amova          Permutation tests on an analysis of molecular
                        variance (in C).
randtest.between        Monte-Carlo Test on the between-groups inertia
                        percentage (in C).
randtest.coinertia      Monte-Carlo test on a Co-inertia analysis (in
                        C).
randtest.discrimin      Monte-Carlo Test on a Discriminant Analysis (in
                        C).
randtest.dpcoa          Permutation test for double principal
                        coordinate analysis (DPCoA)
randtest.pcaiv          Monte-Carlo Test on the percentage of explained
                        (i.e.  constrained) inertia
randxval                Two-fold cross-validation
rankrock                Ordination Table
reconst                 Reconstitution of Data from a Duality Diagram
rhizobium               Genetic structure of two nitrogen fixing
                        bacteria influenced by geographical isolation
                        and host specialization
rhone                   Physico-Chemistry Data
rlq                     RLQ analysis
rpjdl                   Avifauna and Vegetation
rtest                   Class of the Permutation Tests (in R).
rtest.between           Monte-Carlo Test on the between-groups inertia
                        percentage (in R).
rtest.discrimin         Monte-Carlo Test on a Discriminant Analysis (in
                        R).
s.arrow                 Plot of the factorial maps for the projection
                        of a vector basis
s.chull                 Plot of the factorial maps with polygons of
                        contour by level of a factor
s.class                 Plot of factorial maps with representation of
                        point classes
s.corcircle             Plot of the factorial maps of a correlation
                        circle
s.distri                Plot of a frequency distribution
s.hist                  Display of a scatterplot and its two marginal
                        histograms
s.image                 Graph of a variable using image and contour
s.kde2d                 Scatter Plot with Kernel Density Estimate
s.label                 Scatter Plot
s.logo                  Representation of an object in a graph by a
                        picture
s.match                 Plot of Paired Coordinates
s.match.class           Scatterplot of two sets of coordinates and a
                        partionning into classes
s.multinom              Graph of frequency profiles (useful for
                        instance in genetic)
s.traject               Trajectory Plot
s.value                 Representation of a value in a graph
santacatalina           Indirect Ordination
sarcelles               Array of Recapture of Rings
scalewt                 Compute or scale data using (weighted) means,
                        variances and covariances (possibly for the
                        levels of a factor)
scatter                 Graphical representation of the outputs of a
                        multivariate analysis
scatter.acm             Plot of the factorial maps in a Multiple
                        Correspondence Analysis
scatter.coa             Plot of the factorial maps for a correspondence
                        analysis
scatter.dudi            Plot of the Factorial Maps
scatter.fca             Plot of the factorial maps for a fuzzy
                        correspondence analysis
scatterutil             Graphical utility functions
sco.boxplot             Representation of the link between a variable
                        and a set of qualitative variables
sco.class               1D plot of a numeric score and a factor with
                        labels
sco.distri              Representation by mean- standard deviation of a
                        set of weight distributions on a numeric score
sco.gauss               Relationships between one score and qualitative
                        variables
sco.label               1D plot of a numeric score with labels
sco.match               1D plot of a pair of numeric scores with labels
sco.quant               Graph to Analyse the Relation between a Score
                        and Quantitative Variables
score                   Graphs for One Dimension
score.acm               Graphs to study one factor in a Multiple
                        Correspondence Analysis
score.coa               Reciprocal scaling after a correspondence
                        analysis
score.mix               Graphs to Analyse a factor in a Mixed Analysis
score.pca               Graphs to Analyse a factor in PCA
seconde                 Students and Subjects
sepan                   Separated Analyses in a K-tables
skulls                  Morphometric Evolution
statico                 STATIS and Co-Inertia : Analysis of a series of
                        paired ecological tables
statico.krandtest       Monte-Carlo test on a Statico analysis (in C).
statis                  STATIS, a method for analysing K-tables
steppe                  Transect in the Vegetation
summary.between         Between-Class Analysis
summary.multiblock      Display and summarize multiblock objects
supcol                  Projections of Supplementary Columns
supdist                 Projection of additional items in a PCO
                        analysis
suprow                  Projections of Supplementary Rows
symbols.phylog          Representation of a quantitative variable in
                        front of a phylogenetic tree
syndicats               Two Questions asked on a Sample of 1000
                        Respondents
t3012                   Average temperatures of 30 French cities
table.cont              Plot of Contingency Tables
table.dist              Graph Display for Distance Matrices
table.paint             Plot of the arrays by grey levels
table.phylog            Plot arrays in front of a phylogenetic tree
table.value             Plot of the Arrays
tarentaise              Mountain Avifauna
taxo.eg                 Examples of taxonomy
testdim                 Function to perform a test of dimensionality
testdim.multiblock      Selection of the number of dimension by
                        two-fold cross-validation for multiblock
                        methods
tintoodiel              Tinto and Odiel estuary geochemistry
tithonia                Phylogeny and quantitative traits of flowers
tortues                 Morphological Study of the Painted Turtle
toxicity                Homogeneous Table
triangle.class          Triangular Representation and Groups of points
triangle.plot           Triangular Plotting
trichometeo             Pair of Ecological Data
ungulates               Phylogeny and quantitative traits of ungulates.
uniquewt.df             Elimination of Duplicated Rows in a Array
variance.phylog         The phylogenetic ANOVA
varipart                Partition of the variation of a response
                        multivariate table by 2 explanatory tables
vegtf                   Vegetation in Trois-Fontaines
veuvage                 Example for Centring in PCA
wca                     Within-Class Analysis
wca.rlq                 Within-Class RLQ analysis
westafrica              Freshwater fish zoogeography in west Africa
withincoinertia         Within-class coinertia analysis
withinpca               Normed within principal component analysis
witwit.coa              Internal Correspondence Analysis
woangers                Plant assemblages in woodlands of the
                        conurbation of Angers (France)
worksurv                French Worker Survey (1970)
yanomama                Distance Matrices
zealand                 Road distances in New-Zealand
