CONTRIBUTING.rst
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MANIFEST.in
README.rst
requirements-dev.txt
requirements.txt
setup.cfg
setup.py
pyretis/__init__.py
pyretis/info.py
pyretis/version.py
pyretis.egg-info/PKG-INFO
pyretis.egg-info/SOURCES.txt
pyretis.egg-info/dependency_links.txt
pyretis.egg-info/entry_points.txt
pyretis.egg-info/requires.txt
pyretis.egg-info/top_level.txt
pyretis/analysis/__init__.py
pyretis/analysis/analysis.py
pyretis/analysis/energy_analysis.py
pyretis/analysis/flux_analysis.py
pyretis/analysis/histogram.py
pyretis/analysis/order_analysis.py
pyretis/analysis/path_analysis.py
pyretis/core/__init__.py
pyretis/core/box.py
pyretis/core/common.py
pyretis/core/montecarlo.py
pyretis/core/particlefunctions.py
pyretis/core/particles.py
pyretis/core/path.py
pyretis/core/pathensemble.py
pyretis/core/properties.py
pyretis/core/random_gen.py
pyretis/core/retis.py
pyretis/core/system.py
pyretis/core/tis.py
pyretis/core/units.py
pyretis/engines/__init__.py
pyretis/engines/cp2k.py
pyretis/engines/engine.py
pyretis/engines/external.py
pyretis/engines/gromacs.py
pyretis/engines/gromacs2.py
pyretis/engines/internal.py
pyretis/engines/openmm.py
pyretis/forcefield/__init__.py
pyretis/forcefield/factory.py
pyretis/forcefield/forcefield.py
pyretis/forcefield/potential.py
pyretis/forcefield/potentials/__init__.py
pyretis/forcefield/potentials/potentials.py
pyretis/forcefield/potentials/pairpotentials/__init__.py
pyretis/forcefield/potentials/pairpotentials/lennardjones.py
pyretis/forcefield/potentials/pairpotentials/pairpotential.py
pyretis/forcefield/potentials/pairpotentials/wca.py
pyretis/initiation/__init__.py
pyretis/initiation/initiate_kick.py
pyretis/initiation/initiate_load.py
pyretis/initiation/initiate_restart.py
pyretis/inout/__init__.py
pyretis/inout/archive.py
pyretis/inout/common.py
pyretis/inout/fileio.py
pyretis/inout/restart.py
pyretis/inout/screen.py
pyretis/inout/settings.py
pyretis/inout/simulationio.py
pyretis/inout/analysisio/__init__.py
pyretis/inout/analysisio/analysisio.py
pyretis/inout/formats/__init__.py
pyretis/inout/formats/cp2k.py
pyretis/inout/formats/cross.py
pyretis/inout/formats/energy.py
pyretis/inout/formats/formatter.py
pyretis/inout/formats/gromacs.py
pyretis/inout/formats/order.py
pyretis/inout/formats/path.py
pyretis/inout/formats/pathensemble.py
pyretis/inout/formats/snapshot.py
pyretis/inout/formats/txt_table.py
pyretis/inout/formats/xyz.py
pyretis/inout/plotting/__init__.py
pyretis/inout/plotting/mpl_plotting.py
pyretis/inout/plotting/plotting.py
pyretis/inout/plotting/txt_plotting.py
pyretis/inout/plotting/styles/pyretis.mplstyle
pyretis/inout/plotting/styles/pyretisweb.mplstyle
pyretis/inout/report/__init__.py
pyretis/inout/report/markup.py
pyretis/inout/report/report.py
pyretis/inout/report/report_md.py
pyretis/inout/report/report_path.py
pyretis/inout/report/templates/report_mdflux.rst
pyretis/inout/report/templates/report_mdflux.tex
pyretis/inout/report/templates/report_mdflux.txt
pyretis/inout/report/templates/report_retis.rst
pyretis/inout/report/templates/report_retis.tex
pyretis/inout/report/templates/report_retis0.txt
pyretis/inout/report/templates/report_tis-multiple.rst
pyretis/inout/report/templates/report_tis-multiple.tex
pyretis/inout/report/templates/report_tis-multiple.txt
pyretis/inout/report/templates/report_tis.rst
pyretis/inout/report/templates/report_tis.tex
pyretis/inout/report/templates/report_tis.txt
pyretis/inout/setup/__init__.py
pyretis/inout/setup/common.py
pyretis/inout/setup/createforcefield.py
pyretis/inout/setup/createsimulation.py
pyretis/inout/setup/createsystem.py
pyretis/orderparameter/__init__.py
pyretis/orderparameter/orderangle.py
pyretis/orderparameter/orderdihedral.py
pyretis/orderparameter/orderparameter.py
pyretis/simulation/__init__.py
pyretis/simulation/mc_simulation.py
pyretis/simulation/md_simulation.py
pyretis/simulation/path_simulation.py
pyretis/simulation/simulation.py
pyretis/simulation/simulation_task.py
pyretis/tools/__init__.py
pyretis/tools/lattice.py
pyretis/tools/recalculate_order.py
test/__init__.py
test/analysis/__init__.py
test/analysis/help.py
test/analysis/test_energy_analysis.py
test/analysis/test_flux_analysis.py
test/analysis/test_orderp_analysis.py
test/analysis/test_path_analysis.py
test/core/__init__.py
test/core/help.py
test/core/test_box.py
test/core/test_common.py
test/core/test_montecarlo.py
test/core/test_particlefunctions.py
test/core/test_particles.py
test/core/test_path.py
test/core/test_pathensemble.py
test/core/test_random.py
test/core/test_retis.py
test/core/test_system.py
test/core/test_tis.py
test/core/test_units.py
test/engines/__init__.py
test/engines/aprogram.py
test/engines/mockcp2k.py
test/engines/mockgmx.py
test/engines/mockmdrun.py
test/engines/mockmdrun2.py
test/engines/test_cp2k.py
test/engines/test_engines.py
test/engines/test_externalengine.py
test/engines/test_gromacs.py
test/engines/test_gromacs2.py
test/engines/test_internalengine.py
test/engines/test_openmm.py
test/engines/test_helpers/__init__.py
test/engines/test_helpers/test_helpers.py
test/forcefield/__init__.py
test/forcefield/test_forcefield.py
test/forcefield/test_lennardjones.py
test/forcefield/test_pairpotentials.py
test/forcefield/test_potential.py
test/forcefield/test_potentials.py
test/forcefield/test_wcapair.py
test/initiation/__init__.py
test/initiation/help.py
test/initiation/mockcp2k.py
test/initiation/mockgmx.py
test/initiation/mockmdrun.py
test/initiation/test_initiate_kick.py
test/initiation/test_initiate_load.py
test/initiation/test_initiate_restart.py
test/initiation/test_initiation.py
test/inout/__init__.py
test/inout/fooengine.py
test/inout/fooorderparameter.py
test/inout/foopotential.py
test/inout/help.py
test/inout/test_archive.py
test/inout/test_common.py
test/inout/test_cp2kio.py
test/inout/test_createsimulation.py
test/inout/test_createsystem.py
test/inout/test_fileio.py
test/inout/test_formatters.py
test/inout/test_formatters_table.py
test/inout/test_gromacsio.py
test/inout/test_restart.py
test/inout/test_screen.py
test/inout/test_settings.py
test/inout/test_setup_common.py
test/inout/test_simulationio.py
test/inout/test_traj_formatters.py
test/inout/test_xyzio.py
test/orderparameter/__init__.py
test/orderparameter/test_orderparameter.py
test/simulation/__init__.py
test/simulation/test_helpers.py
test/simulation/test_mdsimulation.py
test/simulation/test_pathsimulation.py
test/simulation/test_simulation.py
test/simulation/test_simulation_task.py
test/simulation/test_umbrellawindow.py
test/tools/__init__.py
test/tools/test_lattice.py
test/tools/test_recalculate.py