..\..\..\Scripts\pyemma_list_models-script.py
..\..\..\Scripts\pyemma_list_models.exe
..\feature_sel\__init__.py
..\feature_sel\__pycache__\__init__.cpython-36.pyc
..\feature_sel\__pycache__\backbone_remove_plain.cpython-36.pyc
..\feature_sel\__pycache__\cache_features.cpython-36.pyc
..\feature_sel\__pycache__\cache_features_celery.cpython-36.pyc
..\feature_sel\__pycache__\check_backbone.cpython-36.pyc
..\feature_sel\__pycache__\dbg.cpython-36.pyc
..\feature_sel\__pycache__\generate_run.cpython-36.pyc
..\feature_sel\__pycache__\jobs_logger.cpython-36.pyc
..\feature_sel\__pycache__\mk_output_dirs.cpython-36.pyc
..\feature_sel\__pycache__\restart_workers.cpython-36.pyc
..\feature_sel\__pycache__\run_celery.cpython-36.pyc
..\feature_sel\__pycache__\run_celery_a3d.cpython-36.pyc
..\feature_sel\__pycache__\run_exceeded_memory.cpython-36.pyc
..\feature_sel\__pycache__\run_trans.cpython-36.pyc
..\feature_sel\__pycache__\scoring_features_fast_folders.cpython-36.pyc
..\feature_sel\__pycache__\test_forkmemory.cpython-36.pyc
..\feature_sel\__pycache__\transform_task.cpython-36.pyc
..\feature_sel\analysis\__init__.py
..\feature_sel\analysis\__pycache__\__init__.cpython-36.pyc
..\feature_sel\analysis\__pycache__\best_contact_flex_torsions_chignolin_fragmented.cpython-36.pyc
..\feature_sel\analysis\__pycache__\calc_cov_best_contacts_torsions.cpython-36.pyc
..\feature_sel\analysis\__pycache__\calc_cov_expd_torsions.cpython-36.pyc
..\feature_sel\analysis\__pycache__\calc_cov_single_feat.cpython-36.pyc
..\feature_sel\analysis\__pycache__\calc_cov_single_feat_a3d.cpython-36.pyc
..\feature_sel\analysis\__pycache__\calc_cov_single_feat_lags.cpython-36.pyc
..\feature_sel\analysis\__pycache__\calc_cov_single_feat_res_mindist.cpython-36.pyc
..\feature_sel\analysis\__pycache__\calc_cov_single_feat_res_mindist_new.cpython-36.pyc
..\feature_sel\analysis\__pycache__\clustering_cv.cpython-36.pyc
..\feature_sel\analysis\__pycache__\dbg.cpython-36.pyc
..\feature_sel\analysis\__pycache__\estimate.cpython-36.pyc
..\feature_sel\analysis\__pycache__\grid.cpython-36.pyc
..\feature_sel\analysis\__pycache__\msm.cpython-36.pyc
..\feature_sel\analysis\__pycache__\msm_on_lowrank.cpython-36.pyc
..\feature_sel\analysis\__pycache__\paths.cpython-36.pyc
..\feature_sel\analysis\__pycache__\rescore.cpython-36.pyc
..\feature_sel\analysis\__pycache__\rescore_1FME_joined.cpython-36.pyc
..\feature_sel\analysis\__pycache__\run_failed_rescore.cpython-36.pyc
..\feature_sel\analysis\__pycache__\run_mindist_contacts.cpython-36.pyc
..\feature_sel\analysis\best_contact_flex_torsions_chignolin_fragmented.py
..\feature_sel\analysis\calc_cov_best_contacts_torsions.py
..\feature_sel\analysis\calc_cov_expd_torsions.py
..\feature_sel\analysis\calc_cov_single_feat.py
..\feature_sel\analysis\calc_cov_single_feat_a3d.py
..\feature_sel\analysis\calc_cov_single_feat_lags.py
..\feature_sel\analysis\calc_cov_single_feat_res_mindist.py
..\feature_sel\analysis\calc_cov_single_feat_res_mindist_new.py
..\feature_sel\analysis\clustering_cv.py
..\feature_sel\analysis\dbg.py
..\feature_sel\analysis\estimate.py
..\feature_sel\analysis\grid.py
..\feature_sel\analysis\msm.py
..\feature_sel\analysis\msm_on_lowrank.py
..\feature_sel\analysis\paths.py
..\feature_sel\analysis\rescore.py
..\feature_sel\analysis\rescore_1FME_joined.py
..\feature_sel\analysis\run_failed_rescore.py
..\feature_sel\analysis\run_mindist_contacts.py
..\feature_sel\backbone_remove_plain.py
..\feature_sel\cache_features.py
..\feature_sel\cache_features_celery.py
..\feature_sel\check_backbone.py
..\feature_sel\dbg.py
..\feature_sel\generate_run.py
..\feature_sel\jobs_logger.py
..\feature_sel\mk_output_dirs.py
..\feature_sel\restart_workers.py
..\feature_sel\run_celery.py
..\feature_sel\run_celery_a3d.py
..\feature_sel\run_exceeded_memory.py
..\feature_sel\run_trans.py
..\feature_sel\scoring_features_fast_folders.py
..\feature_sel\test_forkmemory.py
..\feature_sel\transform_task.py
..\pyemma\__init__.py
..\pyemma\__pycache__\__init__.cpython-36.pyc
..\pyemma\__pycache__\_version.cpython-36.pyc
..\pyemma\_base\__init__.py
..\pyemma\_base\__pycache__\__init__.cpython-36.pyc
..\pyemma\_base\__pycache__\estimator.cpython-36.pyc
..\pyemma\_base\__pycache__\loggable.cpython-36.pyc
..\pyemma\_base\__pycache__\model.cpython-36.pyc
..\pyemma\_base\__pycache__\parallel.cpython-36.pyc
..\pyemma\_base\estimator.py
..\pyemma\_base\loggable.py
..\pyemma\_base\model.py
..\pyemma\_base\parallel.py
..\pyemma\_base\progress\__init__.py
..\pyemma\_base\progress\__pycache__\__init__.cpython-36.pyc
..\pyemma\_base\progress\__pycache__\test_progress.cpython-36.pyc
..\pyemma\_base\progress\reporter\__init__.py
..\pyemma\_base\progress\reporter\__pycache__\__init__.cpython-36.pyc
..\pyemma\_base\progress\reporter\__pycache__\notebook.cpython-36.pyc
..\pyemma\_base\progress\reporter\notebook.py
..\pyemma\_base\progress\test_progress.py
..\pyemma\_base\serialization\__init__.py
..\pyemma\_base\serialization\__pycache__\__init__.cpython-36.pyc
..\pyemma\_base\serialization\__pycache__\cli.cpython-36.pyc
..\pyemma\_base\serialization\__pycache__\h5file.cpython-36.pyc
..\pyemma\_base\serialization\__pycache__\mdtraj_helpers.cpython-36.pyc
..\pyemma\_base\serialization\__pycache__\pickle_extensions.cpython-36.pyc
..\pyemma\_base\serialization\__pycache__\serialization.cpython-36.pyc
..\pyemma\_base\serialization\__pycache__\util.cpython-36.pyc
..\pyemma\_base\serialization\cli.py
..\pyemma\_base\serialization\h5file.py
..\pyemma\_base\serialization\mdtraj_helpers.py
..\pyemma\_base\serialization\pickle_extensions.py
..\pyemma\_base\serialization\serialization.py
..\pyemma\_base\serialization\tests\__init__.py
..\pyemma\_base\serialization\tests\__pycache__\__init__.cpython-36.pyc
..\pyemma\_base\serialization\tests\__pycache__\_test_classes.cpython-36.pyc
..\pyemma\_base\serialization\tests\__pycache__\test_cli.cpython-36.pyc
..\pyemma\_base\serialization\tests\__pycache__\test_serialization.cpython-36.pyc
..\pyemma\_base\serialization\tests\__pycache__\test_topology.cpython-36.pyc
..\pyemma\_base\serialization\tests\_test_classes.py
..\pyemma\_base\serialization\tests\test_cli.py
..\pyemma\_base\serialization\tests\test_serialization.py
..\pyemma\_base\serialization\tests\test_topology.py
..\pyemma\_base\serialization\util.py
..\pyemma\_base\tests\__init__.py
..\pyemma\_base\tests\__pycache__\__init__.cpython-36.pyc
..\pyemma\_base\tests\__pycache__\test_estimator.cpython-36.pyc
..\pyemma\_base\tests\test_estimator.py
..\pyemma\_ext\__init__.py
..\pyemma\_ext\__pycache__\__init__.cpython-36.pyc
..\pyemma\_ext\orderedset\__init__.py
..\pyemma\_ext\orderedset\__pycache__\__init__.cpython-36.pyc
..\pyemma\_ext\orderedset\_orderedset.cp36-win_amd64.pyd
..\pyemma\_ext\sklearn\__init__.py
..\pyemma\_ext\sklearn\__pycache__\__init__.cpython-36.pyc
..\pyemma\_ext\sklearn\__pycache__\base.cpython-36.pyc
..\pyemma\_ext\sklearn\__pycache__\parameter_search.cpython-36.pyc
..\pyemma\_ext\sklearn\base.py
..\pyemma\_ext\sklearn\parameter_search.py
..\pyemma\_ext\variational\__init__.py
..\pyemma\_ext\variational\__pycache__\__init__.cpython-36.pyc
..\pyemma\_ext\variational\__pycache__\util.cpython-36.pyc
..\pyemma\_ext\variational\estimators\__init__.py
..\pyemma\_ext\variational\estimators\__pycache__\__init__.cpython-36.pyc
..\pyemma\_ext\variational\estimators\__pycache__\moments.cpython-36.pyc
..\pyemma\_ext\variational\estimators\__pycache__\running_moments.cpython-36.pyc
..\pyemma\_ext\variational\estimators\covar_c\__init__.py
..\pyemma\_ext\variational\estimators\covar_c\__pycache__\__init__.cpython-36.pyc
..\pyemma\_ext\variational\estimators\covar_c\__pycache__\covartools.cpython-36.pyc
..\pyemma\_ext\variational\estimators\covar_c\_covartools.cp36-win_amd64.pyd
..\pyemma\_ext\variational\estimators\covar_c\covartools.py
..\pyemma\_ext\variational\estimators\moments.py
..\pyemma\_ext\variational\estimators\running_moments.py
..\pyemma\_ext\variational\estimators\tests\__init__.py
..\pyemma\_ext\variational\estimators\tests\__pycache__\__init__.cpython-36.pyc
..\pyemma\_ext\variational\estimators\tests\__pycache__\benchmark_moments.cpython-36.pyc
..\pyemma\_ext\variational\estimators\tests\__pycache__\test_moments.cpython-36.pyc
..\pyemma\_ext\variational\estimators\tests\__pycache__\test_running_moments.cpython-36.pyc
..\pyemma\_ext\variational\estimators\tests\benchmark_moments.py
..\pyemma\_ext\variational\estimators\tests\test_moments.py
..\pyemma\_ext\variational\estimators\tests\test_running_moments.py
..\pyemma\_ext\variational\solvers\__init__.py
..\pyemma\_ext\variational\solvers\__pycache__\__init__.cpython-36.pyc
..\pyemma\_ext\variational\solvers\__pycache__\direct.cpython-36.pyc
..\pyemma\_ext\variational\solvers\direct.py
..\pyemma\_ext\variational\solvers\eig_qr\__init__.py
..\pyemma\_ext\variational\solvers\eig_qr\__pycache__\__init__.cpython-36.pyc
..\pyemma\_ext\variational\solvers\eig_qr\eig_qr.cp36-win_amd64.pyd
..\pyemma\_ext\variational\solvers\tests\__init__.py
..\pyemma\_ext\variational\solvers\tests\__pycache__\__init__.cpython-36.pyc
..\pyemma\_ext\variational\solvers\tests\__pycache__\test_direct.cpython-36.pyc
..\pyemma\_ext\variational\solvers\tests\test_direct.py
..\pyemma\_ext\variational\util.py
..\pyemma\_version.py
..\pyemma\coordinates\__init__.py
..\pyemma\coordinates\__pycache__\__init__.cpython-36.pyc
..\pyemma\coordinates\__pycache__\acf.cpython-36.pyc
..\pyemma\coordinates\__pycache__\api.cpython-36.pyc
..\pyemma\coordinates\__pycache__\pipelines.cpython-36.pyc
..\pyemma\coordinates\acf.py
..\pyemma\coordinates\api.py
..\pyemma\coordinates\clustering\__init__.py
..\pyemma\coordinates\clustering\__pycache__\__init__.cpython-36.pyc
..\pyemma\coordinates\clustering\__pycache__\assign.cpython-36.pyc
..\pyemma\coordinates\clustering\__pycache__\interface.cpython-36.pyc
..\pyemma\coordinates\clustering\__pycache__\kmeans.cpython-36.pyc
..\pyemma\coordinates\clustering\__pycache__\regspace.cpython-36.pyc
..\pyemma\coordinates\clustering\__pycache__\uniform_time.cpython-36.pyc
..\pyemma\coordinates\clustering\_ext.cp36-win_amd64.pyd
..\pyemma\coordinates\clustering\assign.py
..\pyemma\coordinates\clustering\interface.py
..\pyemma\coordinates\clustering\kmeans.py
..\pyemma\coordinates\clustering\regspace.py
..\pyemma\coordinates\clustering\tests\__init__.py
..\pyemma\coordinates\clustering\tests\__pycache__\__init__.cpython-36.pyc
..\pyemma\coordinates\clustering\tests\__pycache__\test_assign.cpython-36.pyc
..\pyemma\coordinates\clustering\tests\__pycache__\test_cluster.cpython-36.pyc
..\pyemma\coordinates\clustering\tests\__pycache__\test_cluster_samples.cpython-36.pyc
..\pyemma\coordinates\clustering\tests\__pycache__\test_kmeans.cpython-36.pyc
..\pyemma\coordinates\clustering\tests\__pycache__\test_mini_batch_kmeans.cpython-36.pyc
..\pyemma\coordinates\clustering\tests\__pycache__\test_regspace.cpython-36.pyc
..\pyemma\coordinates\clustering\tests\__pycache__\test_uniform_time.cpython-36.pyc
..\pyemma\coordinates\clustering\tests\__pycache__\util.cpython-36.pyc
..\pyemma\coordinates\clustering\tests\test_assign.py
..\pyemma\coordinates\clustering\tests\test_cluster.py
..\pyemma\coordinates\clustering\tests\test_cluster_samples.py
..\pyemma\coordinates\clustering\tests\test_kmeans.py
..\pyemma\coordinates\clustering\tests\test_mini_batch_kmeans.py
..\pyemma\coordinates\clustering\tests\test_regspace.py
..\pyemma\coordinates\clustering\tests\test_uniform_time.py
..\pyemma\coordinates\clustering\tests\util.py
..\pyemma\coordinates\clustering\uniform_time.py
..\pyemma\coordinates\data\__init__.py
..\pyemma\coordinates\data\__pycache__\__init__.cpython-36.pyc
..\pyemma\coordinates\data\__pycache__\data_in_memory.cpython-36.pyc
..\pyemma\coordinates\data\__pycache__\feature_reader.cpython-36.pyc
..\pyemma\coordinates\data\__pycache__\fragmented_trajectory_reader.cpython-36.pyc
..\pyemma\coordinates\data\__pycache__\h5_reader.cpython-36.pyc
..\pyemma\coordinates\data\__pycache__\numpy_filereader.cpython-36.pyc
..\pyemma\coordinates\data\__pycache__\py_csv_reader.cpython-36.pyc
..\pyemma\coordinates\data\__pycache__\sources_merger.cpython-36.pyc
..\pyemma\coordinates\data\_base\__init__.py
..\pyemma\coordinates\data\_base\__pycache__\__init__.cpython-36.pyc
..\pyemma\coordinates\data\_base\__pycache__\_in_memory_mixin.cpython-36.pyc
..\pyemma\coordinates\data\_base\__pycache__\datasource.cpython-36.pyc
..\pyemma\coordinates\data\_base\__pycache__\iterable.cpython-36.pyc
..\pyemma\coordinates\data\_base\__pycache__\random_accessible.cpython-36.pyc
..\pyemma\coordinates\data\_base\__pycache__\streaming_estimator.cpython-36.pyc
..\pyemma\coordinates\data\_base\__pycache__\transformer.cpython-36.pyc
..\pyemma\coordinates\data\_base\_in_memory_mixin.py
..\pyemma\coordinates\data\_base\datasource.py
..\pyemma\coordinates\data\_base\iterable.py
..\pyemma\coordinates\data\_base\random_accessible.py
..\pyemma\coordinates\data\_base\streaming_estimator.py
..\pyemma\coordinates\data\_base\transformer.py
..\pyemma\coordinates\data\data_in_memory.py
..\pyemma\coordinates\data\feature_reader.py
..\pyemma\coordinates\data\featurization\__init__.py
..\pyemma\coordinates\data\featurization\__pycache__\__init__.cpython-36.pyc
..\pyemma\coordinates\data\featurization\__pycache__\_base.cpython-36.pyc
..\pyemma\coordinates\data\featurization\__pycache__\angles.cpython-36.pyc
..\pyemma\coordinates\data\featurization\__pycache__\distances.cpython-36.pyc
..\pyemma\coordinates\data\featurization\__pycache__\featurizer.cpython-36.pyc
..\pyemma\coordinates\data\featurization\__pycache__\misc.cpython-36.pyc
..\pyemma\coordinates\data\featurization\__pycache__\util.cpython-36.pyc
..\pyemma\coordinates\data\featurization\_base.py
..\pyemma\coordinates\data\featurization\angles.py
..\pyemma\coordinates\data\featurization\distances.py
..\pyemma\coordinates\data\featurization\featurizer.py
..\pyemma\coordinates\data\featurization\misc.py
..\pyemma\coordinates\data\featurization\util.py
..\pyemma\coordinates\data\fragmented_trajectory_reader.py
..\pyemma\coordinates\data\h5_reader.py
..\pyemma\coordinates\data\numpy_filereader.py
..\pyemma\coordinates\data\py_csv_reader.py
..\pyemma\coordinates\data\sources_merger.py
..\pyemma\coordinates\data\util\__init__.py
..\pyemma\coordinates\data\util\__pycache__\__init__.cpython-36.pyc
..\pyemma\coordinates\data\util\__pycache__\frames_from_file.cpython-36.pyc
..\pyemma\coordinates\data\util\__pycache__\reader_utils.cpython-36.pyc
..\pyemma\coordinates\data\util\__pycache__\traj_info_backends.cpython-36.pyc
..\pyemma\coordinates\data\util\__pycache__\traj_info_cache.cpython-36.pyc
..\pyemma\coordinates\data\util\frames_from_file.py
..\pyemma\coordinates\data\util\reader_utils.py
..\pyemma\coordinates\data\util\traj_info_backends.py
..\pyemma\coordinates\data\util\traj_info_cache.py
..\pyemma\coordinates\estimation\__init__.py
..\pyemma\coordinates\estimation\__pycache__\__init__.cpython-36.pyc
..\pyemma\coordinates\estimation\__pycache__\covariance.cpython-36.pyc
..\pyemma\coordinates\estimation\__pycache__\koopman.cpython-36.pyc
..\pyemma\coordinates\estimation\covariance.py
..\pyemma\coordinates\estimation\koopman.py
..\pyemma\coordinates\pipelines.py
..\pyemma\coordinates\tests\__init__.py
..\pyemma\coordinates\tests\__pycache__\__init__.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_acf.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_api_load.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_api_source.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_coordinates_iterator.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_covar_estimator.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_csvreader.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_datainmemory.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_discretizer.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_eq_covar_estimator.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_featurereader.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_featurereader_and_tica.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_featurereader_and_tica_projection.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_featurizer.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_fragmented_trajectory.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_frames_from_file.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_h5reader.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_koopman_estimator.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_numpyfilereader.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_nystroem_tica.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_pca.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_pipeline.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_random_access_stride.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_readers.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_save_traj.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_save_trajs.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_serialization.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_source.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_sources_merger.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_streaming_transformer.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_stride.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_tica.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_traj_info_cache.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\test_vamp.cpython-36.pyc
..\pyemma\coordinates\tests\__pycache__\util.cpython-36.pyc
..\pyemma\coordinates\tests\data\bpti_001-033.xtc
..\pyemma\coordinates\tests\data\bpti_034-066.xtc
..\pyemma\coordinates\tests\data\bpti_067-100.xtc
..\pyemma\coordinates\tests\data\bpti_ca.pdb
..\pyemma\coordinates\tests\data\bpti_mini.binpos
..\pyemma\coordinates\tests\data\bpti_mini.dcd
..\pyemma\coordinates\tests\data\bpti_mini.h5
..\pyemma\coordinates\tests\data\bpti_mini.lh5
..\pyemma\coordinates\tests\data\bpti_mini.nc
..\pyemma\coordinates\tests\data\bpti_mini.netcdf
..\pyemma\coordinates\tests\data\bpti_mini.trr
..\pyemma\coordinates\tests\data\bpti_mini.xtc
..\pyemma\coordinates\tests\data\opsin_Ca_1_frame.pdb.gz
..\pyemma\coordinates\tests\data\opsin_aa_1_frame.pdb.gz
..\pyemma\coordinates\tests\data\test.pdb
..\pyemma\coordinates\tests\data\test_data_koopman.npz
..\pyemma\coordinates\tests\test_acf.py
..\pyemma\coordinates\tests\test_api_load.py
..\pyemma\coordinates\tests\test_api_source.py
..\pyemma\coordinates\tests\test_coordinates_iterator.py
..\pyemma\coordinates\tests\test_covar_estimator.py
..\pyemma\coordinates\tests\test_csvreader.py
..\pyemma\coordinates\tests\test_datainmemory.py
..\pyemma\coordinates\tests\test_discretizer.py
..\pyemma\coordinates\tests\test_eq_covar_estimator.py
..\pyemma\coordinates\tests\test_featurereader.py
..\pyemma\coordinates\tests\test_featurereader_and_tica.py
..\pyemma\coordinates\tests\test_featurereader_and_tica_projection.py
..\pyemma\coordinates\tests\test_featurizer.py
..\pyemma\coordinates\tests\test_fragmented_trajectory.py
..\pyemma\coordinates\tests\test_frames_from_file.py
..\pyemma\coordinates\tests\test_h5reader.py
..\pyemma\coordinates\tests\test_koopman_estimator.py
..\pyemma\coordinates\tests\test_numpyfilereader.py
..\pyemma\coordinates\tests\test_nystroem_tica.py
..\pyemma\coordinates\tests\test_pca.py
..\pyemma\coordinates\tests\test_pipeline.py
..\pyemma\coordinates\tests\test_random_access_stride.py
..\pyemma\coordinates\tests\test_readers.py
..\pyemma\coordinates\tests\test_save_traj.py
..\pyemma\coordinates\tests\test_save_trajs.py
..\pyemma\coordinates\tests\test_serialization.py
..\pyemma\coordinates\tests\test_source.py
..\pyemma\coordinates\tests\test_sources_merger.py
..\pyemma\coordinates\tests\test_streaming_transformer.py
..\pyemma\coordinates\tests\test_stride.py
..\pyemma\coordinates\tests\test_tica.py
..\pyemma\coordinates\tests\test_traj_info_cache.py
..\pyemma\coordinates\tests\test_vamp.py
..\pyemma\coordinates\tests\util.py
..\pyemma\coordinates\transform\__init__.py
..\pyemma\coordinates\transform\__pycache__\__init__.cpython-36.pyc
..\pyemma\coordinates\transform\__pycache__\_tica_base.cpython-36.pyc
..\pyemma\coordinates\transform\__pycache__\nystroem_tica.cpython-36.pyc
..\pyemma\coordinates\transform\__pycache__\pca.cpython-36.pyc
..\pyemma\coordinates\transform\__pycache__\tica.cpython-36.pyc
..\pyemma\coordinates\transform\__pycache__\vamp.cpython-36.pyc
..\pyemma\coordinates\transform\_tica_base.py
..\pyemma\coordinates\transform\nystroem_tica.py
..\pyemma\coordinates\transform\pca.py
..\pyemma\coordinates\transform\tica.py
..\pyemma\coordinates\transform\vamp.py
..\pyemma\coordinates\util\__init__.py
..\pyemma\coordinates\util\__pycache__\__init__.cpython-36.pyc
..\pyemma\coordinates\util\__pycache__\patches.cpython-36.pyc
..\pyemma\coordinates\util\__pycache__\stat.cpython-36.pyc
..\pyemma\coordinates\util\patches.py
..\pyemma\coordinates\util\stat.py
..\pyemma\datasets\__init__.py
..\pyemma\datasets\__pycache__\__init__.cpython-36.pyc
..\pyemma\datasets\__pycache__\api.cpython-36.pyc
..\pyemma\datasets\__pycache__\double_well_discrete.cpython-36.pyc
..\pyemma\datasets\__pycache__\double_well_thermo.cpython-36.pyc
..\pyemma\datasets\__pycache__\potentials.cpython-36.pyc
..\pyemma\datasets\api.py
..\pyemma\datasets\double_well_discrete.npz
..\pyemma\datasets\double_well_discrete.py
..\pyemma\datasets\double_well_thermo.py
..\pyemma\datasets\potentials.py
..\pyemma\datasets\tests\__init__.py
..\pyemma\datasets\tests\__pycache__\__init__.cpython-36.pyc
..\pyemma\datasets\tests\__pycache__\test_datasets.cpython-36.pyc
..\pyemma\datasets\tests\test_datasets.py
..\pyemma\logging.yml
..\pyemma\msm\__init__.py
..\pyemma\msm\__pycache__\__init__.cpython-36.pyc
..\pyemma\msm\__pycache__\api.cpython-36.pyc
..\pyemma\msm\api.py
..\pyemma\msm\estimators\_OOM_MSM.py
..\pyemma\msm\estimators\__init__.py
..\pyemma\msm\estimators\__pycache__\_OOM_MSM.cpython-36.pyc
..\pyemma\msm\estimators\__pycache__\__init__.cpython-36.pyc
..\pyemma\msm\estimators\__pycache__\_dtraj_stats.cpython-36.pyc
..\pyemma\msm\estimators\__pycache__\_msm_estimator_base.cpython-36.pyc
..\pyemma\msm\estimators\__pycache__\augmented_msm.cpython-36.pyc
..\pyemma\msm\estimators\__pycache__\bayesian_hmsm.cpython-36.pyc
..\pyemma\msm\estimators\__pycache__\bayesian_msm.cpython-36.pyc
..\pyemma\msm\estimators\__pycache__\implied_timescales.cpython-36.pyc
..\pyemma\msm\estimators\__pycache__\lagged_model_validators.cpython-36.pyc
..\pyemma\msm\estimators\__pycache__\maximum_likelihood_hmsm.cpython-36.pyc
..\pyemma\msm\estimators\__pycache__\maximum_likelihood_msm.cpython-36.pyc
..\pyemma\msm\estimators\__pycache__\oom_reweighted_msm.cpython-36.pyc
..\pyemma\msm\estimators\_dtraj_stats.py
..\pyemma\msm\estimators\_msm_estimator_base.py
..\pyemma\msm\estimators\augmented_msm.py
..\pyemma\msm\estimators\bayesian_hmsm.py
..\pyemma\msm\estimators\bayesian_msm.py
..\pyemma\msm\estimators\implied_timescales.py
..\pyemma\msm\estimators\lagged_model_validators.py
..\pyemma\msm\estimators\maximum_likelihood_hmsm.py
..\pyemma\msm\estimators\maximum_likelihood_msm.py
..\pyemma\msm\estimators\oom_reweighted_msm.py
..\pyemma\msm\models\__init__.py
..\pyemma\msm\models\__pycache__\__init__.cpython-36.pyc
..\pyemma\msm\models\__pycache__\hmsm.cpython-36.pyc
..\pyemma\msm\models\__pycache__\hmsm_sampled.cpython-36.pyc
..\pyemma\msm\models\__pycache__\msm.cpython-36.pyc
..\pyemma\msm\models\__pycache__\msm_sampled.cpython-36.pyc
..\pyemma\msm\models\__pycache__\pcca.cpython-36.pyc
..\pyemma\msm\models\__pycache__\reactive_flux.cpython-36.pyc
..\pyemma\msm\models\hmsm.py
..\pyemma\msm\models\hmsm_sampled.py
..\pyemma\msm\models\msm.py
..\pyemma\msm\models\msm_sampled.py
..\pyemma\msm\models\pcca.py
..\pyemma\msm\models\reactive_flux.py
..\pyemma\msm\tests\__init__.py
..\pyemma\msm\tests\__pycache__\__init__.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\birth_death_chain.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\test_amm.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\test_bayesian_hmsm.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\test_bayesian_msm.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\test_cktest.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\test_dtraj_stats.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\test_estimator.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\test_hmsm.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\test_its.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\test_its_oom.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\test_msm.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\test_msm_serialization.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\test_oom_msm.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\test_reactive_flux.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\test_subset.cpython-36.pyc
..\pyemma\msm\tests\__pycache__\test_tpt.cpython-36.pyc
..\pyemma\msm\tests\birth_death_chain.py
..\pyemma\msm\tests\data\TestData_ITS_OOM.npz
..\pyemma\msm\tests\data\TestData_OOM_MSM.npz
..\pyemma\msm\tests\test_amm.py
..\pyemma\msm\tests\test_bayesian_hmsm.py
..\pyemma\msm\tests\test_bayesian_msm.py
..\pyemma\msm\tests\test_cktest.py
..\pyemma\msm\tests\test_dtraj_stats.py
..\pyemma\msm\tests\test_estimator.py
..\pyemma\msm\tests\test_hmsm.py
..\pyemma\msm\tests\test_its.py
..\pyemma\msm\tests\test_its_oom.py
..\pyemma\msm\tests\test_msm.py
..\pyemma\msm\tests\test_msm_serialization.py
..\pyemma\msm\tests\test_oom_msm.py
..\pyemma\msm\tests\test_reactive_flux.py
..\pyemma\msm\tests\test_subset.py
..\pyemma\msm\tests\test_tpt.py
..\pyemma\msm\util\__init__.py
..\pyemma\msm\util\__pycache__\__init__.cpython-36.pyc
..\pyemma\msm\util\__pycache__\subset.cpython-36.pyc
..\pyemma\msm\util\subset.py
..\pyemma\plots\__init__.py
..\pyemma\plots\__pycache__\__init__.cpython-36.pyc
..\pyemma\plots\__pycache__\markovtests.cpython-36.pyc
..\pyemma\plots\__pycache__\networks.cpython-36.pyc
..\pyemma\plots\__pycache__\plots1d.cpython-36.pyc
..\pyemma\plots\__pycache__\plots2d.cpython-36.pyc
..\pyemma\plots\__pycache__\thermoplots.cpython-36.pyc
..\pyemma\plots\__pycache__\timescales.cpython-36.pyc
..\pyemma\plots\_ext\__init__.py
..\pyemma\plots\_ext\__pycache__\__init__.cpython-36.pyc
..\pyemma\plots\_ext\__pycache__\fruchterman_reingold.cpython-36.pyc
..\pyemma\plots\_ext\fruchterman_reingold.py
..\pyemma\plots\markovtests.py
..\pyemma\plots\networks.py
..\pyemma\plots\plots1d.py
..\pyemma\plots\plots2d.py
..\pyemma\plots\tests\__init__.py
..\pyemma\plots\tests\__pycache__\__init__.cpython-36.pyc
..\pyemma\plots\tests\__pycache__\test_its.cpython-36.pyc
..\pyemma\plots\tests\__pycache__\test_markovtests.cpython-36.pyc
..\pyemma\plots\tests\__pycache__\test_networks.cpython-36.pyc
..\pyemma\plots\tests\__pycache__\test_plots1d.cpython-36.pyc
..\pyemma\plots\tests\__pycache__\test_plots2d.cpython-36.pyc
..\pyemma\plots\tests\test_its.py
..\pyemma\plots\tests\test_markovtests.py
..\pyemma\plots\tests\test_networks.py
..\pyemma\plots\tests\test_plots1d.py
..\pyemma\plots\tests\test_plots2d.py
..\pyemma\plots\thermoplots.py
..\pyemma\plots\timescales.py
..\pyemma\pyemma.cfg
..\pyemma\thermo\__init__.py
..\pyemma\thermo\__pycache__\__init__.cpython-36.pyc
..\pyemma\thermo\__pycache__\api.cpython-36.pyc
..\pyemma\thermo\api.py
..\pyemma\thermo\estimators\DTRAM_estimator.py
..\pyemma\thermo\estimators\MBAR_estimator.py
..\pyemma\thermo\estimators\TRAM_estimator.py
..\pyemma\thermo\estimators\WHAM_estimator.py
..\pyemma\thermo\estimators\__init__.py
..\pyemma\thermo\estimators\__pycache__\DTRAM_estimator.cpython-36.pyc
..\pyemma\thermo\estimators\__pycache__\MBAR_estimator.cpython-36.pyc
..\pyemma\thermo\estimators\__pycache__\TRAM_estimator.cpython-36.pyc
..\pyemma\thermo\estimators\__pycache__\WHAM_estimator.cpython-36.pyc
..\pyemma\thermo\estimators\__pycache__\__init__.cpython-36.pyc
..\pyemma\thermo\estimators\__pycache__\_base.cpython-36.pyc
..\pyemma\thermo\estimators\__pycache__\_callback.cpython-36.pyc
..\pyemma\thermo\estimators\_base.py
..\pyemma\thermo\estimators\_callback.py
..\pyemma\thermo\extensions\__init__.py
..\pyemma\thermo\extensions\__pycache__\__init__.cpython-36.pyc
..\pyemma\thermo\extensions\__pycache__\callback.cpython-36.pyc
..\pyemma\thermo\extensions\__pycache__\cset.cpython-36.pyc
..\pyemma\thermo\extensions\bar.cp36-win_amd64.pyd
..\pyemma\thermo\extensions\callback.py
..\pyemma\thermo\extensions\cset.py
..\pyemma\thermo\extensions\dtram.cp36-win_amd64.pyd
..\pyemma\thermo\extensions\mbar.cp36-win_amd64.pyd
..\pyemma\thermo\extensions\mbar_direct.cp36-win_amd64.pyd
..\pyemma\thermo\extensions\tram.cp36-win_amd64.pyd
..\pyemma\thermo\extensions\tram_direct.cp36-win_amd64.pyd
..\pyemma\thermo\extensions\trammbar.cp36-win_amd64.pyd
..\pyemma\thermo\extensions\trammbar_direct.cp36-win_amd64.pyd
..\pyemma\thermo\extensions\util.cp36-win_amd64.pyd
..\pyemma\thermo\extensions\wham.cp36-win_amd64.pyd
..\pyemma\thermo\models\__init__.py
..\pyemma\thermo\models\__pycache__\__init__.cpython-36.pyc
..\pyemma\thermo\models\__pycache__\memm.cpython-36.pyc
..\pyemma\thermo\models\__pycache__\multi_therm.cpython-36.pyc
..\pyemma\thermo\models\__pycache__\stationary.cpython-36.pyc
..\pyemma\thermo\models\memm.py
..\pyemma\thermo\models\multi_therm.py
..\pyemma\thermo\models\stationary.py
..\pyemma\thermo\util\__init__.py
..\pyemma\thermo\util\__pycache__\__init__.cpython-36.pyc
..\pyemma\thermo\util\__pycache__\util.cpython-36.pyc
..\pyemma\thermo\util\util.py
..\pyemma\util\__init__.py
..\pyemma\util\__pycache__\__init__.cpython-36.pyc
..\pyemma\util\__pycache__\_config.cpython-36.pyc
..\pyemma\util\__pycache__\annotators.cpython-36.pyc
..\pyemma\util\__pycache__\contexts.cpython-36.pyc
..\pyemma\util\__pycache__\debug.cpython-36.pyc
..\pyemma\util\__pycache__\discrete_trajectories.cpython-36.pyc
..\pyemma\util\__pycache__\exceptions.cpython-36.pyc
..\pyemma\util\__pycache__\files.cpython-36.pyc
..\pyemma\util\__pycache__\indices.cpython-36.pyc
..\pyemma\util\__pycache__\linalg.cpython-36.pyc
..\pyemma\util\__pycache__\log.cpython-36.pyc
..\pyemma\util\__pycache__\metrics.cpython-36.pyc
..\pyemma\util\__pycache__\numeric.cpython-36.pyc
..\pyemma\util\__pycache__\reflection.cpython-36.pyc
..\pyemma\util\__pycache__\statistics.cpython-36.pyc
..\pyemma\util\__pycache__\testing_tools.cpython-36.pyc
..\pyemma\util\__pycache__\types.cpython-36.pyc
..\pyemma\util\__pycache__\units.cpython-36.pyc
..\pyemma\util\_config.py
..\pyemma\util\annotators.py
..\pyemma\util\contexts.py
..\pyemma\util\debug.py
..\pyemma\util\discrete_trajectories.py
..\pyemma\util\exceptions.py
..\pyemma\util\files.py
..\pyemma\util\indices.py
..\pyemma\util\linalg.py
..\pyemma\util\log.py
..\pyemma\util\metrics.py
..\pyemma\util\numeric.py
..\pyemma\util\reflection.py
..\pyemma\util\statistics.py
..\pyemma\util\testing_tools.py
..\pyemma\util\tests\__init__.py
..\pyemma\util\tests\__pycache__\__init__.cpython-36.pyc
..\pyemma\util\tests\__pycache__\statistics_test.cpython-36.pyc
..\pyemma\util\tests\__pycache__\test_config.cpython-36.pyc
..\pyemma\util\tests\__pycache__\test_discrete_trajectories.cpython-36.pyc
..\pyemma\util\tests\__pycache__\test_log.cpython-36.pyc
..\pyemma\util\tests\__pycache__\test_shortcut.cpython-36.pyc
..\pyemma\util\tests\__pycache__\test_units.cpython-36.pyc
..\pyemma\util\tests\data\dtraj.dat
..\pyemma\util\tests\data\dtraj.npy
..\pyemma\util\tests\statistics_test.py
..\pyemma\util\tests\test_config.py
..\pyemma\util\tests\test_discrete_trajectories.py
..\pyemma\util\tests\test_log.py
..\pyemma\util\tests\test_shortcut.py
..\pyemma\util\tests\test_units.py
..\pyemma\util\types.py
..\pyemma\util\units.py
PKG-INFO
SOURCES.txt
dependency_links.txt
entry_points.txt
not-zip-safe
requires.txt
top_level.txt
