AUTHORS.txt
LICENSE.txt
MANIFEST.in
README.rst
TODO.txt
WHATS_NEW.txt
setup.cfg
setup.py
PyDSTool/Events.py
PyDSTool/FuncSpec.py
PyDSTool/Interval.py
PyDSTool/Model.py
PyDSTool/ModelContext.py
PyDSTool/ModelSpec.py
PyDSTool/ModelTools.py
PyDSTool/Points.py
PyDSTool/Symbolic.py
PyDSTool/Trajectory.py
PyDSTool/Variable.py
PyDSTool/__init__.py
PyDSTool/common.py
PyDSTool/conf.py
PyDSTool/errors.py
PyDSTool/integrator.py
PyDSTool/matplotlib_import.py
PyDSTool/parseUtils.py
PyDSTool/utils.py
PyDSTool.egg-info/PKG-INFO
PyDSTool.egg-info/SOURCES.txt
PyDSTool.egg-info/dependency_links.txt
PyDSTool.egg-info/requires.txt
PyDSTool.egg-info/top_level.txt
PyDSTool/Generator/ADMC_ODEsystem.py
PyDSTool/Generator/DDEsystem.py
PyDSTool/Generator/Dopri_ODEsystem.py
PyDSTool/Generator/EmbeddedSysGen.py
PyDSTool/Generator/Euler_ODEsystem.py
PyDSTool/Generator/ExplicitFnGen.py
PyDSTool/Generator/ExtrapolateTable.py
PyDSTool/Generator/ImplicitFnGen.py
PyDSTool/Generator/InterpolateTable.py
PyDSTool/Generator/LookupTable.py
PyDSTool/Generator/MapSystem.py
PyDSTool/Generator/ODEsystem.py
PyDSTool/Generator/Radau_ODEsystem.py
PyDSTool/Generator/Vode_ODEsystem.py
PyDSTool/Generator/__init__.py
PyDSTool/Generator/allimports.py
PyDSTool/Generator/baseclasses.py
PyDSTool/Generator/messagecodes.py
PyDSTool/Generator/mixins.py
PyDSTool/PyCont/BifPoint.py
PyDSTool/PyCont/ContClass.py
PyDSTool/PyCont/Continuation.py
PyDSTool/PyCont/Makefile
PyDSTool/PyCont/Plotting.py
PyDSTool/PyCont/TestFunc.py
PyDSTool/PyCont/__init__.py
PyDSTool/PyCont/biblio_for_examples.txt
PyDSTool/PyCont/misc.py
PyDSTool/PyCont/auto/cmds/auto.env.csh
PyDSTool/PyCont/auto/cmds/auto.env.sh
PyDSTool/PyCont/auto/demos/ab/Makefile
PyDSTool/PyCont/auto/demos/ab/ab.c
PyDSTool/PyCont/auto/demos/lor/Makefile
PyDSTool/PyCont/auto/demos/lor/lor.c
PyDSTool/PyCont/auto/demos/lor/lor.c.dev
PyDSTool/PyCont/auto/demos/lor/lor.dat
PyDSTool/PyCont/auto/dev/cflow.out
PyDSTool/PyCont/auto/module/Makefile
PyDSTool/PyCont/auto/module/automod.c
PyDSTool/PyCont/auto/module/automod.i
PyDSTool/PyCont/auto/module/interface.c
PyDSTool/PyCont/auto/module/include/Makefile
PyDSTool/PyCont/auto/module/include/automod.h
PyDSTool/PyCont/auto/module/include/autovfield.h
PyDSTool/PyCont/auto/module/include/interface.h
PyDSTool/PyCont/auto/src/Makefile
PyDSTool/PyCont/auto/src/README
PyDSTool/PyCont/auto/src/autlab.c
PyDSTool/PyCont/auto/src/autlib1.c
PyDSTool/PyCont/auto/src/autlib2.c
PyDSTool/PyCont/auto/src/autlib3.c
PyDSTool/PyCont/auto/src/autlib4.c
PyDSTool/PyCont/auto/src/autlib5.c
PyDSTool/PyCont/auto/src/auto.c
PyDSTool/PyCont/auto/src/conpar.c
PyDSTool/PyCont/auto/src/dgesvd.c
PyDSTool/PyCont/auto/src/dmatrix.c
PyDSTool/PyCont/auto/src/eispack.c
PyDSTool/PyCont/auto/src/fcon.c
PyDSTool/PyCont/auto/src/reduce.c
PyDSTool/PyCont/auto/src/setubv.c
PyDSTool/PyCont/auto/src/include/Makefile
PyDSTool/PyCont/auto/src/include/auto.h
PyDSTool/PyCont/auto/src/include/auto_c.h
PyDSTool/PyCont/auto/src/include/auto_f2c.h
PyDSTool/PyCont/auto/src/include/auto_mpi.h
PyDSTool/PyCont/auto/src/include/auto_types.h
PyDSTool/PyCont/auto/src/include/numpy.i
PyDSTool/PyCont/auto/src/libf2c/Makefile
PyDSTool/PyCont/auto/src/libf2c/cabs.c
PyDSTool/PyCont/auto/src/libf2c/d_imag.c
PyDSTool/PyCont/auto/src/libf2c/d_lg10.c
PyDSTool/PyCont/auto/src/libf2c/d_sign.c
PyDSTool/PyCont/auto/src/libf2c/i_dnnt.c
PyDSTool/PyCont/auto/src/libf2c/i_nint.c
PyDSTool/PyCont/auto/src/libf2c/pow_dd.c
PyDSTool/PyCont/auto/src/libf2c/pow_di.c
PyDSTool/PyCont/auto/src/libf2c/pow_ii.c
PyDSTool/PyCont/auto/src/libf2c/r_lg10.c
PyDSTool/PyCont/auto/src/libf2c/z_abs.c
PyDSTool/PyCont/auto/src/libf2c/z_exp.c
PyDSTool/PyCont/auto/src/libf2c/z_log.c
PyDSTool/Toolbox/ActivationFuncs.py
PyDSTool/Toolbox/DSSRT_tools.py
PyDSTool/Toolbox/FR.py
PyDSTool/Toolbox/FSM.py
PyDSTool/Toolbox/InputProfile.py
PyDSTool/Toolbox/ModelEst.py
PyDSTool/Toolbox/ModelHelper.py
PyDSTool/Toolbox/NineML.py
PyDSTool/Toolbox/PRCtools.py
PyDSTool/Toolbox/ParamEst.py
PyDSTool/Toolbox/PySCes_SBML.py
PyDSTool/Toolbox/__init__.py
PyDSTool/Toolbox/adjointPRC.py
PyDSTool/Toolbox/data_analysis.py
PyDSTool/Toolbox/dssrt.py
PyDSTool/Toolbox/event_driven_simulator.py
PyDSTool/Toolbox/fracdim.py
PyDSTool/Toolbox/makeSloppyModel.py
PyDSTool/Toolbox/mechmatlib.py
PyDSTool/Toolbox/model_primitives.py
PyDSTool/Toolbox/neuralcomp.py
PyDSTool/Toolbox/neuro_data.py
PyDSTool/Toolbox/phaseplane.py
PyDSTool/Toolbox/prep_boxplot.py
PyDSTool/Toolbox/synthetic_data.py
PyDSTool/Toolbox/test_protocols.py
PyDSTool/Toolbox/optimizers/__init__.py
PyDSTool/Toolbox/optimizers/defaults.py
PyDSTool/Toolbox/optimizers/criterion/__init__.py
PyDSTool/Toolbox/optimizers/criterion/composite_criteria.py
PyDSTool/Toolbox/optimizers/criterion/criteria.py
PyDSTool/Toolbox/optimizers/criterion/facilities.py
PyDSTool/Toolbox/optimizers/criterion/information_criteria.py
PyDSTool/Toolbox/optimizers/helpers/__init__.py
PyDSTool/Toolbox/optimizers/helpers/finite_difference.py
PyDSTool/Toolbox/optimizers/helpers/levenberg_marquardt.py
PyDSTool/Toolbox/optimizers/helpers/quadratic.py
PyDSTool/Toolbox/optimizers/line_search/__init__.py
PyDSTool/Toolbox/optimizers/line_search/adaptive_last_step_modifier.py
PyDSTool/Toolbox/optimizers/line_search/backtracking_search.py
PyDSTool/Toolbox/optimizers/line_search/barzilai_borwein_non_monotone_search.py
PyDSTool/Toolbox/optimizers/line_search/barzilai_borwein_search.py
PyDSTool/Toolbox/optimizers/line_search/cubic_interpolation.py
PyDSTool/Toolbox/optimizers/line_search/damped_line_search.py
PyDSTool/Toolbox/optimizers/line_search/fibonacci_section.py
PyDSTool/Toolbox/optimizers/line_search/fixed_last_step_modifier.py
PyDSTool/Toolbox/optimizers/line_search/golden_section.py
PyDSTool/Toolbox/optimizers/line_search/goldstein_rule.py
PyDSTool/Toolbox/optimizers/line_search/hyperbolic_line_search.py
PyDSTool/Toolbox/optimizers/line_search/quadratic_interpolation.py
PyDSTool/Toolbox/optimizers/line_search/scaled_line_search.py
PyDSTool/Toolbox/optimizers/line_search/simple_line_search.py
PyDSTool/Toolbox/optimizers/line_search/strong_wolfe_powell_rule.py
PyDSTool/Toolbox/optimizers/line_search/wolfe_powell_rule.py
PyDSTool/Toolbox/optimizers/optimizer/__init__.py
PyDSTool/Toolbox/optimizers/optimizer/optimizer.py
PyDSTool/Toolbox/optimizers/optimizer/standard_optimizer.py
PyDSTool/Toolbox/optimizers/optimizer/standard_optimizer_modifying.py
PyDSTool/Toolbox/optimizers/step/__init__.py
PyDSTool/Toolbox/optimizers/step/conjugate_gradient_step.py
PyDSTool/Toolbox/optimizers/step/goldfeld_step.py
PyDSTool/Toolbox/optimizers/step/goldstein_price_step.py
PyDSTool/Toolbox/optimizers/step/gradient_step.py
PyDSTool/Toolbox/optimizers/step/local_brute_force_1dstep.py
PyDSTool/Toolbox/optimizers/step/marquardt_step.py
PyDSTool/Toolbox/optimizers/step/newton_step.py
PyDSTool/Toolbox/optimizers/step/partial_step.py
PyDSTool/Toolbox/optimizers/step/quasi_newton_step.py
PyDSTool/Toolbox/optimizers/step/restart_conjugate_gradient.py
PyDSTool/core/__init__.py
PyDSTool/core/context_managers.py
PyDSTool/core/codegenerators/__init__.py
PyDSTool/core/codegenerators/base.py
PyDSTool/core/codegenerators/c.py
PyDSTool/core/codegenerators/matlab.py
PyDSTool/core/codegenerators/python.py
PyDSTool/integrator/dc_lapack.f
PyDSTool/integrator/dop853.c
PyDSTool/integrator/dop853.h
PyDSTool/integrator/dop853.i
PyDSTool/integrator/dop853mod.c
PyDSTool/integrator/dop853mod.h
PyDSTool/integrator/eventFinding.c
PyDSTool/integrator/eventFinding.h
PyDSTool/integrator/events.h
PyDSTool/integrator/integration.c
PyDSTool/integrator/integration.h
PyDSTool/integrator/interface.c
PyDSTool/integrator/interface.h
PyDSTool/integrator/lapack.f
PyDSTool/integrator/lapackc.f
PyDSTool/integrator/maxmin.c
PyDSTool/integrator/maxmin.h
PyDSTool/integrator/memory.c
PyDSTool/integrator/memory.h
PyDSTool/integrator/radau5.f
PyDSTool/integrator/radau5.h
PyDSTool/integrator/radau5.i
PyDSTool/integrator/radau5mod.c
PyDSTool/integrator/radau5mod.h
PyDSTool/integrator/radau5mod_wrap.c
PyDSTool/integrator/radau5v.f
PyDSTool/integrator/signum.c
PyDSTool/integrator/signum.h
PyDSTool/integrator/vfield.h