INSTALL
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README.rst
build_docs.py
setup.cfg
setup.py
doc/.gitignore
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nipype/COMMIT_INFO.txt
nipype/__init__.py
nipype/conftest.py
nipype/info.py
nipype/pkg_info.py
nipype/pytest.ini
nipype/refs.py
nipype.egg-info/PKG-INFO
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nipype/interfaces/ants/__init__.py
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nipype/interfaces/ants/tests/test_extra_Registration.py
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nipype/interfaces/base/__init__.py
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nipype/interfaces/base/specs.py
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nipype/interfaces/base/tests/__init__.py
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nipype/interfaces/base/tests/test_core.py
nipype/interfaces/base/tests/test_resource_monitor.py
nipype/interfaces/base/tests/test_specs.py
nipype/interfaces/base/tests/test_support.py
nipype/interfaces/brainsuite/__init__.py
nipype/interfaces/brainsuite/brainsuite.py
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nipype/interfaces/camino/__init__.py
nipype/interfaces/camino/calib.py
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nipype/interfaces/camino/dti.py
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nipype/interfaces/camino2trackvis/__init__.py
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nipype/interfaces/diffusion_toolkit/__init__.py
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nipype/interfaces/diffusion_toolkit/tests/test_auto_SplineFilter.py
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nipype/interfaces/dipy/__init__.py
nipype/interfaces/dipy/anisotropic_power.py
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nipype/interfaces/dipy/simulate.py
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nipype/interfaces/dipy/tracks.py
nipype/interfaces/dipy/tests/__init__.py
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nipype/interfaces/dipy/tests/test_auto_CSD.py
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nipype/interfaces/dipy/tests/test_auto_DipyDiffusionInterface.py
nipype/interfaces/dipy/tests/test_auto_EstimateResponseSH.py
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nipype/interfaces/dtitk/__init__.py
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nipype/interfaces/freesurfer/__init__.py
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nipype/interfaces/freesurfer/longitudinal.py
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nipype/interfaces/freesurfer/tests/test_auto_FSScriptCommand.py
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nipype/interfaces/freesurfer/tests/test_auto_MPRtoMNI305.py
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nipype/interfaces/freesurfer/tests/test_auto_MRIFill.py
nipype/interfaces/freesurfer/tests/test_auto_MRIMarchingCubes.py
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nipype/interfaces/freesurfer/tests/test_auto_MRISPreprocReconAll.py
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nipype/interfaces/freesurfer/tests/test_auto_MRIsInflate.py
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nipype/interfaces/freesurfer/tests/test_auto_ParseDICOMDir.py
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nipype/interfaces/freesurfer/tests/test_auto_Register.py
nipype/interfaces/freesurfer/tests/test_auto_RegisterAVItoTalairach.py
nipype/interfaces/freesurfer/tests/test_auto_RelabelHypointensities.py
nipype/interfaces/freesurfer/tests/test_auto_RemoveIntersection.py
nipype/interfaces/freesurfer/tests/test_auto_RemoveNeck.py
nipype/interfaces/freesurfer/tests/test_auto_Resample.py
nipype/interfaces/freesurfer/tests/test_auto_RobustRegister.py
nipype/interfaces/freesurfer/tests/test_auto_RobustTemplate.py
nipype/interfaces/freesurfer/tests/test_auto_SampleToSurface.py
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nipype/interfaces/freesurfer/tests/test_auto_SegStatsReconAll.py
nipype/interfaces/freesurfer/tests/test_auto_SegmentCC.py
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nipype/interfaces/fsl/__init__.py
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nipype/interfaces/fsl/model_templates/feat_ev_ortho.tcl
nipype/interfaces/fsl/model_templates/feat_fe_copes.tcl
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nipype/interfaces/fsl/model_templates/feat_header_l1.tcl
nipype/interfaces/fsl/model_templates/feat_nongui.tcl
nipype/interfaces/fsl/model_templates/featreg_header.tcl
nipype/interfaces/fsl/tests/__init__.py
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nipype/interfaces/fsl/tests/test_Level1Design_functions.py
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nipype/interfaces/fsl/tests/test_auto_BET.py
nipype/interfaces/fsl/tests/test_auto_BinaryMaths.py
nipype/interfaces/fsl/tests/test_auto_ChangeDataType.py
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nipype/interfaces/fsl/tests/test_auto_Cleaner.py
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nipype/interfaces/fsl/tests/test_auto_ConvertXFM.py
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nipype/interfaces/fsl/tests/test_auto_DistanceMap.py
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nipype/interfaces/fsl/tests/test_auto_EddyCorrect.py
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nipype/interfaces/fsl/tests/test_auto_ExtractROI.py
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nipype/interfaces/fsl/tests/test_auto_FEAT.py
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nipype/interfaces/fsl/tests/test_auto_FLAMEO.py
nipype/interfaces/fsl/tests/test_auto_FLIRT.py
nipype/interfaces/fsl/tests/test_auto_FNIRT.py
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nipype/interfaces/fsl/tests/test_auto_FSLXCommand.py
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nipype/interfaces/fsl/tests/test_auto_FindTheBiggest.py
nipype/interfaces/fsl/tests/test_auto_GLM.py
nipype/interfaces/fsl/tests/test_auto_ICA_AROMA.py
nipype/interfaces/fsl/tests/test_auto_ImageMaths.py
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nipype/interfaces/fsl/tests/test_auto_ImageStats.py
nipype/interfaces/fsl/tests/test_auto_InvWarp.py
nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py
nipype/interfaces/fsl/tests/test_auto_L2Model.py
nipype/interfaces/fsl/tests/test_auto_Level1Design.py
nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py
nipype/interfaces/fsl/tests/test_auto_MELODIC.py
nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py
nipype/interfaces/fsl/tests/test_auto_MathsCommand.py
nipype/interfaces/fsl/tests/test_auto_MaxImage.py
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nipype/interfaces/fsl/tests/test_auto_MeanImage.py
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nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py
nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py
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nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py
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nipype/interfaces/fsl/tests/test_auto_WarpUtils.py
nipype/interfaces/fsl/tests/test_auto_XFibres5.py
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nipype/interfaces/fsl/tests/test_model.py
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nipype/interfaces/minc/__init__.py
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nipype/interfaces/minc/minc.py
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nipype/interfaces/minc/tests/__init__.py
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nipype/interfaces/minc/tests/test_auto_Dump.py
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nipype/interfaces/minc/tests/test_auto_ToEcat.py
nipype/interfaces/minc/tests/test_auto_ToRaw.py
nipype/interfaces/minc/tests/test_auto_VolSymm.py
nipype/interfaces/minc/tests/test_auto_Volcentre.py
nipype/interfaces/minc/tests/test_auto_Voliso.py
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nipype/interfaces/minc/tests/test_auto_XfmAvg.py
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nipype/interfaces/minc/tests/test_auto_XfmInvert.py
nipype/interfaces/mipav/__init__.py
nipype/interfaces/mipav/developer.py
nipype/interfaces/mipav/generate_classes.py
nipype/interfaces/mipav/tests/__init__.py
nipype/interfaces/mipav/tests/test_auto_JistBrainMgdmSegmentation.py
nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageDuraEstimation.py
nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageSkullStripping.py
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nipype/interfaces/mipav/tests/test_auto_JistCortexSurfaceMeshInflation.py
nipype/interfaces/mipav/tests/test_auto_JistIntensityMp2rageMasking.py
nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileCalculator.py
nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileGeometry.py
nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileSampling.py
nipype/interfaces/mipav/tests/test_auto_JistLaminarROIAveraging.py
nipype/interfaces/mipav/tests/test_auto_JistLaminarVolumetricLayering.py
nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmImageCalculator.py
nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmLesionToads.py
nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmMipavReorient.py
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nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmSPECTRE2010.py
nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmThresholdToBinaryMask.py
nipype/interfaces/mipav/tests/test_auto_RandomVol.py
nipype/interfaces/mixins/__init__.py
nipype/interfaces/mixins/reporting.py
nipype/interfaces/mixins/tests/__init__.py
nipype/interfaces/mixins/tests/test_auto_ReportCapableInterface.py
nipype/interfaces/mne/__init__.py
nipype/interfaces/mne/base.py
nipype/interfaces/mne/tests/__init__.py
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nipype/interfaces/mrtrix/__init__.py
nipype/interfaces/mrtrix/convert.py
nipype/interfaces/mrtrix/preprocess.py
nipype/interfaces/mrtrix/tensors.py
nipype/interfaces/mrtrix/tracking.py
nipype/interfaces/mrtrix3/__init__.py
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nipype/interfaces/mrtrix3/connectivity.py
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nipype/interfaces/mrtrix3/tracking.py
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nipype/interfaces/niftyfit/__init__.py
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nipype/interfaces/niftyseg/__init__.py
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nipype/interfaces/niftyseg/lesions.py
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nipype/interfaces/niftyseg/tests/test_auto_BinaryStats.py
nipype/interfaces/niftyseg/tests/test_auto_CalcTopNCC.py
nipype/interfaces/niftyseg/tests/test_auto_EM.py
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nipype/interfaces/niftyseg/tests/test_auto_PatchMatch.py
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nipype/interfaces/niftyseg/tests/test_auto_TupleMaths.py
nipype/interfaces/niftyseg/tests/test_auto_UnaryMaths.py
nipype/interfaces/niftyseg/tests/test_auto_UnaryStats.py
nipype/interfaces/niftyseg/tests/test_em_interfaces.py
nipype/interfaces/niftyseg/tests/test_extra_PatchMatch.py
nipype/interfaces/niftyseg/tests/test_label_fusion.py
nipype/interfaces/niftyseg/tests/test_lesions.py
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nipype/interfaces/nipy/__init__.py
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nipype/interfaces/nipy/model.py
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nipype/interfaces/nipy/utils.py
nipype/interfaces/nipy/tests/__init__.py
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nipype/interfaces/nitime/__init__.py
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nipype/interfaces/semtools/__init__.py
nipype/interfaces/semtools/converters.py
nipype/interfaces/semtools/featurecreator.py
nipype/interfaces/semtools/brains/__init__.py
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nipype/interfaces/semtools/brains/tests/test_auto_HistogramMatchingFilter.py
nipype/interfaces/semtools/brains/tests/test_auto_SimilarityIndex.py
nipype/interfaces/semtools/diffusion/__init__.py
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nipype/interfaces/semtools/diffusion/maxcurvature.py
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nipype/interfaces/semtools/diffusion/tests/test_auto_dtiaverage.py
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nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoregBvalues.py
nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCostFastMarching.py
nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCreateGuideFiber.py
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nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleB0.py
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nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTransformToDisplacementField.py
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nipype/interfaces/semtools/diffusion/tractography/__init__.py
nipype/interfaces/semtools/diffusion/tractography/commandlineonly.py
nipype/interfaces/semtools/diffusion/tractography/fiberprocess.py
nipype/interfaces/semtools/diffusion/tractography/fibertrack.py
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nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberprocess.py
nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberstats.py
nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fibertrack.py
nipype/interfaces/semtools/filtering/__init__.py
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nipype/interfaces/semtools/filtering/tests/test_auto_CannySegmentationLevelSetImageFilter.py
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nipype/interfaces/semtools/filtering/tests/test_auto_DistanceMaps.py
nipype/interfaces/semtools/filtering/tests/test_auto_DumpBinaryTrainingVectors.py
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nipype/interfaces/semtools/filtering/tests/test_auto_FlippedDifference.py
nipype/interfaces/semtools/filtering/tests/test_auto_GenerateBrainClippedImage.py
nipype/interfaces/semtools/filtering/tests/test_auto_GenerateSummedGradientImage.py
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nipype/interfaces/semtools/filtering/tests/test_auto_HammerAttributeCreator.py
nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMean.py
nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMedian.py
nipype/interfaces/semtools/filtering/tests/test_auto_STAPLEAnalysis.py
nipype/interfaces/semtools/filtering/tests/test_auto_TextureFromNoiseImageFilter.py
nipype/interfaces/semtools/filtering/tests/test_auto_TextureMeasureFilter.py
nipype/interfaces/semtools/filtering/tests/test_auto_UnbiasedNonLocalMeans.py
nipype/interfaces/semtools/legacy/__init__.py
nipype/interfaces/semtools/legacy/registration.py
nipype/interfaces/semtools/legacy/tests/__init__.py
nipype/interfaces/semtools/legacy/tests/test_auto_scalartransform.py
nipype/interfaces/semtools/registration/__init__.py
nipype/interfaces/semtools/registration/brainsfit.py
nipype/interfaces/semtools/registration/brainsresample.py
nipype/interfaces/semtools/registration/brainsresize.py
nipype/interfaces/semtools/registration/specialized.py
nipype/interfaces/semtools/registration/tests/__init__.py
nipype/interfaces/semtools/registration/tests/test_auto_BRAINSDemonWarp.py
nipype/interfaces/semtools/registration/tests/test_auto_BRAINSFit.py
nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResample.py
nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResize.py
nipype/interfaces/semtools/registration/tests/test_auto_BRAINSTransformFromFiducials.py
nipype/interfaces/semtools/registration/tests/test_auto_VBRAINSDemonWarp.py
nipype/interfaces/semtools/segmentation/__init__.py
nipype/interfaces/semtools/segmentation/specialized.py
nipype/interfaces/semtools/segmentation/tests/__init__.py
nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSABC.py
nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSConstellationDetector.py
nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCreateLabelMapFromProbabilityMaps.py
nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCut.py
nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSMultiSTAPLE.py
nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSROIAuto.py
nipype/interfaces/semtools/segmentation/tests/test_auto_BinaryMaskEditorBasedOnLandmarks.py
nipype/interfaces/semtools/segmentation/tests/test_auto_ESLR.py
nipype/interfaces/semtools/testing/__init__.py
nipype/interfaces/semtools/testing/featuredetection.py
nipype/interfaces/semtools/testing/generateaveragelmkfile.py
nipype/interfaces/semtools/testing/landmarkscompare.py
nipype/interfaces/semtools/tests/__init__.py
nipype/interfaces/semtools/tests/test_auto_DWICompare.py
nipype/interfaces/semtools/tests/test_auto_DWISimpleCompare.py
nipype/interfaces/semtools/tests/test_auto_GenerateCsfClippedFromClassifiedImage.py
nipype/interfaces/semtools/utilities/__init__.py
nipype/interfaces/semtools/utilities/brains.py
nipype/interfaces/semtools/utilities/tests/__init__.py
nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSAlignMSP.py
nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSClipInferior.py
nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSConstellationModeler.py
nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSEyeDetector.py
nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSInitializedControlPoints.py
nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLandmarkInitializer.py
nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLinearModelerEPCA.py
nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLmkTransform.py
nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSMush.py
nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSSnapShotWriter.py
nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTransformConvert.py
nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTrimForegroundInDirection.py
nipype/interfaces/semtools/utilities/tests/test_auto_CleanUpOverlapLabels.py
nipype/interfaces/semtools/utilities/tests/test_auto_FindCenterOfBrain.py
nipype/interfaces/semtools/utilities/tests/test_auto_GenerateLabelMapFromProbabilityMap.py
nipype/interfaces/semtools/utilities/tests/test_auto_ImageRegionPlotter.py
nipype/interfaces/semtools/utilities/tests/test_auto_JointHistogram.py
nipype/interfaces/semtools/utilities/tests/test_auto_ShuffleVectorsModule.py
nipype/interfaces/semtools/utilities/tests/test_auto_fcsv_to_hdf5.py
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nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationAligner.py
nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationWeights.py
nipype/interfaces/slicer/__init__.py
nipype/interfaces/slicer/base.py
nipype/interfaces/slicer/converters.py
nipype/interfaces/slicer/generate_classes.py
nipype/interfaces/slicer/surface.py
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nipype/interfaces/slicer/diffusion/__init__.py
nipype/interfaces/slicer/diffusion/diffusion.py
nipype/interfaces/slicer/diffusion/tests/__init__.py
nipype/interfaces/slicer/diffusion/tests/test_auto_DTIexport.py
nipype/interfaces/slicer/diffusion/tests/test_auto_DTIimport.py
nipype/interfaces/slicer/diffusion/tests/test_auto_DWIJointRicianLMMSEFilter.py
nipype/interfaces/slicer/diffusion/tests/test_auto_DWIRicianLMMSEFilter.py
nipype/interfaces/slicer/diffusion/tests/test_auto_DWIToDTIEstimation.py
nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionTensorScalarMeasurements.py
nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionWeightedVolumeMasking.py
nipype/interfaces/slicer/diffusion/tests/test_auto_ResampleDTIVolume.py
nipype/interfaces/slicer/diffusion/tests/test_auto_TractographyLabelMapSeeding.py
nipype/interfaces/slicer/filtering/__init__.py
nipype/interfaces/slicer/filtering/arithmetic.py
nipype/interfaces/slicer/filtering/checkerboardfilter.py
nipype/interfaces/slicer/filtering/denoising.py
nipype/interfaces/slicer/filtering/extractskeleton.py
nipype/interfaces/slicer/filtering/histogrammatching.py
nipype/interfaces/slicer/filtering/imagelabelcombine.py
nipype/interfaces/slicer/filtering/morphology.py
nipype/interfaces/slicer/filtering/n4itkbiasfieldcorrection.py
nipype/interfaces/slicer/filtering/resamplescalarvectordwivolume.py
nipype/interfaces/slicer/filtering/thresholdscalarvolume.py
nipype/interfaces/slicer/filtering/votingbinaryholefillingimagefilter.py
nipype/interfaces/slicer/filtering/tests/__init__.py
nipype/interfaces/slicer/filtering/tests/test_auto_AddScalarVolumes.py
nipype/interfaces/slicer/filtering/tests/test_auto_CastScalarVolume.py
nipype/interfaces/slicer/filtering/tests/test_auto_CheckerBoardFilter.py
nipype/interfaces/slicer/filtering/tests/test_auto_CurvatureAnisotropicDiffusion.py
nipype/interfaces/slicer/filtering/tests/test_auto_ExtractSkeleton.py
nipype/interfaces/slicer/filtering/tests/test_auto_GaussianBlurImageFilter.py
nipype/interfaces/slicer/filtering/tests/test_auto_GradientAnisotropicDiffusion.py
nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleFillHoleImageFilter.py
nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleGrindPeakImageFilter.py
nipype/interfaces/slicer/filtering/tests/test_auto_HistogramMatching.py
nipype/interfaces/slicer/filtering/tests/test_auto_ImageLabelCombine.py
nipype/interfaces/slicer/filtering/tests/test_auto_MaskScalarVolume.py
nipype/interfaces/slicer/filtering/tests/test_auto_MedianImageFilter.py
nipype/interfaces/slicer/filtering/tests/test_auto_MultiplyScalarVolumes.py
nipype/interfaces/slicer/filtering/tests/test_auto_N4ITKBiasFieldCorrection.py
nipype/interfaces/slicer/filtering/tests/test_auto_ResampleScalarVectorDWIVolume.py
nipype/interfaces/slicer/filtering/tests/test_auto_SubtractScalarVolumes.py
nipype/interfaces/slicer/filtering/tests/test_auto_ThresholdScalarVolume.py
nipype/interfaces/slicer/filtering/tests/test_auto_VotingBinaryHoleFillingImageFilter.py
nipype/interfaces/slicer/legacy/__init__.py
nipype/interfaces/slicer/legacy/converters.py
nipype/interfaces/slicer/legacy/filtering.py
nipype/interfaces/slicer/legacy/registration.py
nipype/interfaces/slicer/legacy/segmentation.py
nipype/interfaces/slicer/legacy/diffusion/__init__.py
nipype/interfaces/slicer/legacy/diffusion/denoising.py
nipype/interfaces/slicer/legacy/diffusion/tests/__init__.py
nipype/interfaces/slicer/legacy/diffusion/tests/test_auto_DWIUnbiasedNonLocalMeansFilter.py
nipype/interfaces/slicer/legacy/tests/__init__.py
nipype/interfaces/slicer/legacy/tests/test_auto_AffineRegistration.py
nipype/interfaces/slicer/legacy/tests/test_auto_BSplineDeformableRegistration.py
nipype/interfaces/slicer/legacy/tests/test_auto_BSplineToDeformationField.py
nipype/interfaces/slicer/legacy/tests/test_auto_ExpertAutomatedRegistration.py
nipype/interfaces/slicer/legacy/tests/test_auto_LinearRegistration.py
nipype/interfaces/slicer/legacy/tests/test_auto_MultiResolutionAffineRegistration.py
nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdImageFilter.py
nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdSegmentation.py
nipype/interfaces/slicer/legacy/tests/test_auto_ResampleScalarVolume.py
nipype/interfaces/slicer/legacy/tests/test_auto_RigidRegistration.py
nipype/interfaces/slicer/quantification/__init__.py
nipype/interfaces/slicer/quantification/changequantification.py
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nipype/utils/matlabtools.py
nipype/utils/misc.py
nipype/utils/nipype2boutiques.py
nipype/utils/nipype_cmd.py
nipype/utils/onetime.py
nipype/utils/profiler.py
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nipype/utils/spm_docs.py
nipype/utils/tmpdirs.py
nipype/utils/tests/__init__.py
nipype/utils/tests/test_cmd.py
nipype/utils/tests/test_config.py
nipype/utils/tests/test_docparse.py
nipype/utils/tests/test_filemanip.py
nipype/utils/tests/test_functions.py
nipype/utils/tests/test_misc.py
nipype/utils/tests/test_nipype2boutiques.py
nipype/utils/tests/test_provenance.py
nipype/workflows/__init__.py
nipype/workflows/data/__init__.py
nipype/workflows/data/ecc.sch
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nipype/workflows/dmri/camino/__init__.py
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nipype/workflows/dmri/camino/group_connectivity.py
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nipype/workflows/dmri/dipy/denoise.py
nipype/workflows/dmri/dtitk/__init__.py
nipype/workflows/dmri/dtitk/tensor_registration.py
nipype/workflows/dmri/fsl/__init__.py
nipype/workflows/dmri/fsl/artifacts.py
nipype/workflows/dmri/fsl/dti.py
nipype/workflows/dmri/fsl/epi.py
nipype/workflows/dmri/fsl/tbss.py
nipype/workflows/dmri/fsl/utils.py
nipype/workflows/dmri/fsl/tests/__init__.py
nipype/workflows/dmri/fsl/tests/test_dti.py
nipype/workflows/dmri/fsl/tests/test_epi.py
nipype/workflows/dmri/fsl/tests/test_tbss.py
nipype/workflows/dmri/mrtrix/__init__.py
nipype/workflows/dmri/mrtrix/connectivity_mapping.py
nipype/workflows/dmri/mrtrix/diffusion.py
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nipype/workflows/fmri/fsl/__init__.py
nipype/workflows/fmri/fsl/estimate.py
nipype/workflows/fmri/fsl/preprocess.py
nipype/workflows/fmri/fsl/tests/__init__.py
nipype/workflows/fmri/fsl/tests/test_preprocess.py
nipype/workflows/fmri/spm/__init__.py
nipype/workflows/fmri/spm/estimate.py
nipype/workflows/fmri/spm/preprocess.py
nipype/workflows/fmri/spm/tests/__init__.py
nipype/workflows/graph/__init__.py
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nipype/workflows/misc/utils.py
nipype/workflows/rsfmri/__init__.py
nipype/workflows/rsfmri/fsl/__init__.py
nipype/workflows/rsfmri/fsl/resting.py
nipype/workflows/rsfmri/fsl/tests/__init__.py
nipype/workflows/rsfmri/fsl/tests/test_resting.py
nipype/workflows/smri/__init__.py
nipype/workflows/smri/ants/ANTSBuildTemplate.py
nipype/workflows/smri/ants/__init__.py
nipype/workflows/smri/ants/antsRegistrationBuildTemplate.py
nipype/workflows/smri/freesurfer/__init__.py
nipype/workflows/smri/freesurfer/autorecon1.py
nipype/workflows/smri/freesurfer/autorecon2.py
nipype/workflows/smri/freesurfer/autorecon3.py
nipype/workflows/smri/freesurfer/ba_maps.py
nipype/workflows/smri/freesurfer/bem.py
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nipype/workflows/warp/__init__.py
tools/README
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tools/build_interface_docs.py
tools/build_modref_templates.py
tools/checkspecs.py
tools/ex2rst
tools/feedstock.sh
tools/github.py
tools/gitwash_dumper.py
tools/install_spm_mcr.sh
tools/interfacedocgen.py
tools/make_examples.py
tools/retry_cmd.sh
tools/run_examples.py
tools/toollib.py
tools/update_changes.sh