Metadata-Version: 2.1
Name: msprime
Version: 0.6.2
Summary: A fast and accurate coalescent simulator.
Home-page: http://pypi.python.org/pypi/msprime
Author: Jerome Kelleher
Author-email: jerome.kelleher@well.ox.ac.uk
License: GNU GPLv3+
Keywords: Coalescent simulation,ms
Platform: POSIX
Platform: Windows
Platform: MacOS X
Classifier: Programming Language :: C
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Other Environment
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Operating System :: POSIX
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Dist: numpy (>=1.7.0)
Requires-Dist: h5py
Requires-Dist: svgwrite
Requires-Dist: six
Requires-Dist: jsonschema

=======
msprime
=======

Msprime is a coalescent simulator and library for processing
tree-based genetic data. Msprime can simulate the coalescent with
recombination over whole chromosomes for hundreds of thousands of
samples, and very efficiently process the resulting genealogies.
It is also possible to efficiently read data from external
sources via a well defined and efficient `interchange API
<https://msprime.readthedocs.org/en/stable/interchange.html>`_.

If you use ``msprime`` in your work, please cite the `PLOS Computational
Biology <http://dx.doi.org/10.1371/journal.pcbi.1004842>`_ paper.
See `here <https://msprime.readthedocs.org/en/stable/CITATION.html>`__ for
full citation details.

Please see the `documentation <https://msprime.readthedocs.org/en/stable/>`_
for further details.

Msprime is very portable, and provides a number of installation options.
See `here <https://msprime.readthedocs.org/en/stable/installation.html>`_ for
details.


