#!/opt/anaconda1anaconda2anaconda3\python.exe

import sys
from os import path
import numpy as np
import mahotas as mh
import argparse
from itertools import chain

RED = '\033[91m'
GREEN = '\033[92m'
YELLOW = '\033[93m'
LIGHT_PURPLE = '\033[94m'
PURPLE = '\033[95m'
END = '\033[0m'

def print_error(text, color=True):
    '''Prints error message

    Arguments
    ---------
    text : str
        Error message
    color : bool, optional
        Whether to print in colour.
    '''
    if color and sys.stderr.isatty():
        sys.stderr.write("{}ERROR: {}{}\n".format(RED, text, END))
    else:
        sys.stderr.write("ERROR: {}\n".format(text))


def read_bw(fname, options):
    '''Read image `fname` as greyscale

    Parameters
    ----------
    fname : str, file-name
    options : argparse result

    Returns
    -------
    image : ndarray
        Two dimensional ndarray
    '''
    im = mh.imread(fname)
    if im.ndim == 2:
        return im
    if im.ndim == 3:
        if options.convert_to_bw == 'max' or im.ptp(2).max() == 0:
            # This is a greyscale image, saved as colour
            return im.max(2)
        if options.convert_to_bw == 'yes':
            return mh.colors.rgb2grey(im, dtype=np.uint8)
    print_error("{} is not a greyscale image (and --convert-to-bw was not specified)".format(fname), not options.no_color)
    sys.exit(1)

def _write_row(output, items, header=None):
    if header:
        output.write(header)
    for it in items:
        output.write('\t')
        output.write(str(it))
    output.write('\n')

def main():
    sys.stderr.write(mh.citation(print_out=False, short=True))
    sys.stderr.write('\n\n')
    parser = argparse.ArgumentParser(
            description='Compute features using mahotas')
    parser.add_argument(
                    'fnames', metavar='input_file_name', nargs='+', type=str,
                            help='Image files names')
    parser.add_argument(
                    '--output', default='features.tsv', type=str,
                            help='Output file for feature files')
    parser.add_argument(
                    '--clobber', default=False, action='store_true',
                            help='Overwrite output file (if it exists)')
    parser.add_argument(
                    '--convert-to-bw', default='no',
                    help='Convert color images to greyscale.\nAcceptable values:\n\tno: raises an error (default)' +
                        '\n\tmax: use max projection' +
                        '\n\tyes: use rgb2gray')
    parser.add_argument(
                    '--no-color', default=False, action='store_true',
                            help='Do not print in color (for error and warning messages)')
    parser.add_argument(
                    '--haralick', default=False, action='store_true',
                            help='Compute Haralick features')
    parser.add_argument(
                    '--lbp', default=False, action='store_true',
                            help='Compute LBP (linear binary patterns) features')
    parser.add_argument(
                    '--lbp-radius', default=8, action='store', type=int,
                            help='Radius to use for LBP features')
    parser.add_argument(
                    '--lbp-points', default=6, action='store', type=int,
                            help='Nr of points to use for LBP features')
    args = parser.parse_args()
    if not (args.haralick or args.lbp):
        sys.stderr.write('''\
No features selected. Doing nothing.

For example, use --haralick switch to compute Haralick features\n''')
        sys.exit(1)

    if not args.clobber and path.exists(args.output):
        print_error('Output file ({}) already exists. Refusing to overwrite results without --clobber argument.'.format(args.output))
        sys.exit(2)

    output = open(args.output, 'w')
    colnames = []
    if args.haralick:
        hlabels = mh.features.texture.haralick_labels[:-1]
        colnames.extend(["mean:{}".format(ell) for ell in hlabels])
        colnames.extend(["ptp:{}".format(ell) for ell in hlabels])
    if args.lbp:
        from mahotas.features.lbp import lbp_names
        colnames.extend(lbp_names(args.lbp_radius, args.lbp_points))
    _write_row(output, colnames)

    for fname in args.fnames:
        cur = []
        im = read_bw(fname, args)
        if args.haralick:
            har = mh.features.haralick(im, return_mean_ptp=True)
            cur.append(har)
        if args.lbp:
            cur.append(mh.features.lbp(im, args.lbp_radius, args.lbp_points))

        _write_row(output, chain.from_iterable(cur), fname)
    output.close()

if __name__ == '__main__':
    main()
