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Library/include/IMP/container/DistributeTripletsScoreState.h
Library/include/IMP/container/DynamicListPairContainer.h
Library/include/IMP/container/DynamicListQuadContainer.h
Library/include/IMP/container/DynamicListSingletonContainer.h
Library/include/IMP/container/DynamicListTripletContainer.h
Library/include/IMP/container/EventPairsOptimizerState.h
Library/include/IMP/container/EventQuadsOptimizerState.h
Library/include/IMP/container/EventSingletonsOptimizerState.h
Library/include/IMP/container/EventTripletsOptimizerState.h
Library/include/IMP/container/InContainerPairFilter.h
Library/include/IMP/container/InContainerQuadFilter.h
Library/include/IMP/container/InContainerSingletonFilter.h
Library/include/IMP/container/InContainerTripletFilter.h
Library/include/IMP/container/ListPairContainer.h
Library/include/IMP/container/ListQuadContainer.h
Library/include/IMP/container/ListSingletonContainer.h
Library/include/IMP/container/ListTripletContainer.h
Library/include/IMP/container/MinimumPairRestraint.h
Library/include/IMP/container/MinimumPairScore.h
Library/include/IMP/container/MinimumQuadRestraint.h
Library/include/IMP/container/MinimumQuadScore.h
Library/include/IMP/container/MinimumSingletonRestraint.h
Library/include/IMP/container/MinimumSingletonScore.h
Library/include/IMP/container/MinimumTripletRestraint.h
Library/include/IMP/container/MinimumTripletScore.h
Library/include/IMP/container/PairContainerSet.h
Library/include/IMP/container/PairContainerStatistics.h
Library/include/IMP/container/PairsConstraint.h
Library/include/IMP/container/PairsOptimizerState.h
Library/include/IMP/container/PairsRestraint.h
Library/include/IMP/container/PredicatePairsRestraint.h
Library/include/IMP/container/PredicateQuadsRestraint.h
Library/include/IMP/container/PredicateSingletonsRestraint.h
Library/include/IMP/container/PredicateTripletsRestraint.h
Library/include/IMP/container/QuadContainerSet.h
Library/include/IMP/container/QuadContainerStatistics.h
Library/include/IMP/container/QuadsConstraint.h
Library/include/IMP/container/QuadsOptimizerState.h
Library/include/IMP/container/QuadsRestraint.h
Library/include/IMP/container/SingletonContainerSet.h
Library/include/IMP/container/SingletonContainerStatistics.h
Library/include/IMP/container/SingletonsConstraint.h
Library/include/IMP/container/SingletonsOptimizerState.h
Library/include/IMP/container/SingletonsRestraint.h
Library/include/IMP/container/TripletContainerSet.h
Library/include/IMP/container/TripletContainerStatistics.h
Library/include/IMP/container/TripletsConstraint.h
Library/include/IMP/container/TripletsOptimizerState.h
Library/include/IMP/container/TripletsRestraint.h
Library/include/IMP/container/container_config.h
Library/include/IMP/container/generic.h
Library/include/IMP/container/internal/CloseBipartitePairContainer.h
Library/include/IMP/container/internal/ClosePairContainer.h
Library/include/IMP/container/internal/PairContainerIndex.h
Library/include/IMP/container/internal/QuadContainerIndex.h
Library/include/IMP/container/internal/SingletonContainerIndex.h
Library/include/IMP/container/internal/TripletContainerIndex.h
Library/include/IMP/container_base.h
Library/include/IMP/container_macros.h
Library/include/IMP/core.h
Library/include/IMP/core/AngleRestraint.h
Library/include/IMP/core/AngleTripletScore.h
Library/include/IMP/core/BallMover.h
Library/include/IMP/core/BoundingBox3DSingletonScore.h
Library/include/IMP/core/BoundingSphere3DSingletonScore.h
Library/include/IMP/core/BoxSweepClosePairsFinder.h
Library/include/IMP/core/CentroidOfRefined.h
Library/include/IMP/core/ChecksScoreState.h
Library/include/IMP/core/ChildrenRefiner.h
Library/include/IMP/core/ClosePairsFinder.h
Library/include/IMP/core/ClosePairsPairScore.h
Library/include/IMP/core/ClosedCubicSpline.h
Library/include/IMP/core/ConjugateGradients.h
Library/include/IMP/core/ConnectivityRestraint.h
Library/include/IMP/core/ConstantRestraint.h
Library/include/IMP/core/Cosine.h
Library/include/IMP/core/CoverRefined.h
Library/include/IMP/core/DataObject.h
Library/include/IMP/core/DerivativesFromRefined.h
Library/include/IMP/core/DerivativesToRefined.h
Library/include/IMP/core/DiameterRestraint.h
Library/include/IMP/core/DihedralRestraint.h
Library/include/IMP/core/DirectionMover.h
Library/include/IMP/core/DistancePairScore.h
Library/include/IMP/core/DistanceRestraint.h
Library/include/IMP/core/DistanceToSingletonScore.h
Library/include/IMP/core/ExcludedVolumeRestraint.h
Library/include/IMP/core/FixedRefiner.h
Library/include/IMP/core/Gaussian.h
Library/include/IMP/core/GenericAttributeSingletonScore.h
Library/include/IMP/core/GridClosePairsFinder.h
Library/include/IMP/core/Harmonic.h
Library/include/IMP/core/HarmonicLowerBound.h
Library/include/IMP/core/HarmonicUpperBound.h
Library/include/IMP/core/HarmonicWell.h
Library/include/IMP/core/Hierarchy.h
Library/include/IMP/core/IncrementalScoringFunction.h
Library/include/IMP/core/LeavesRefiner.h
Library/include/IMP/core/Linear.h
Library/include/IMP/core/LogNormalMover.h
Library/include/IMP/core/MCCGSampler.h
Library/include/IMP/core/MSConnectivityRestraint.h
Library/include/IMP/core/MinimumRestraint.h
Library/include/IMP/core/MonteCarlo.h
Library/include/IMP/core/MonteCarloMover.h
Library/include/IMP/core/MoveStatisticsScoreState.h
Library/include/IMP/core/MultipleBinormalRestraint.h
Library/include/IMP/core/NearestNeighborsClosePairsFinder.h
Library/include/IMP/core/NeighborsTable.h
Library/include/IMP/core/NormalMover.h
Library/include/IMP/core/OpenCubicSpline.h
Library/include/IMP/core/PairConstraint.h
Library/include/IMP/core/PairRestraint.h
Library/include/IMP/core/PeriodicOptimizerState.h
Library/include/IMP/core/QuadConstraint.h
Library/include/IMP/core/QuadRestraint.h
Library/include/IMP/core/QuadraticClosePairsFinder.h
Library/include/IMP/core/RefinedPairsPairScore.h
Library/include/IMP/core/RestraintsScoringFunction.h
Library/include/IMP/core/RigidBodyAnglePairScore.h
Library/include/IMP/core/RigidBodyDistancePairScore.h
Library/include/IMP/core/RigidBodyMover.h
Library/include/IMP/core/RigidBodyTunneler.h
Library/include/IMP/core/RigidBodyUmbrella.h
Library/include/IMP/core/RigidClosePairsFinder.h
Library/include/IMP/core/SerialMover.h
Library/include/IMP/core/SingletonConstraint.h
Library/include/IMP/core/SingletonRestraint.h
Library/include/IMP/core/SphereDistancePairScore.h
Library/include/IMP/core/StatisticalPairScore.h
Library/include/IMP/core/SteepestDescent.h
Library/include/IMP/core/SubsetMover.h
Library/include/IMP/core/Surface.h
Library/include/IMP/core/SurfaceDistancePairScore.h
Library/include/IMP/core/SurfaceMover.h
Library/include/IMP/core/SurfaceSymmetryConstraint.h
Library/include/IMP/core/SurfaceTetheredChain.h
Library/include/IMP/core/TableRefiner.h
Library/include/IMP/core/Transform.h
Library/include/IMP/core/TransformedDistancePairScore.h
Library/include/IMP/core/TripletConstraint.h
Library/include/IMP/core/TripletRestraint.h
Library/include/IMP/core/TruncatedHarmonic.h
Library/include/IMP/core/Typed.h
Library/include/IMP/core/TypedPairScore.h
Library/include/IMP/core/VolumeRestraint.h
Library/include/IMP/core/WeightedDerivativesToRefined.h
Library/include/IMP/core/WeightedSum.h
Library/include/IMP/core/WeightedSumOfExponential.h
Library/include/IMP/core/XYZ.h
Library/include/IMP/core/XYZR.h
Library/include/IMP/core/blame.h
Library/include/IMP/core/core_config.h
Library/include/IMP/core/direction.h
Library/include/IMP/core/generic.h
Library/include/IMP/core/internal/MovedSingletonContainer.h
Library/include/IMP/core/internal/angle_helpers.h
Library/include/IMP/core/internal/close_pairs_helpers.h
Library/include/IMP/core/internal/container_helpers.h
Library/include/IMP/core/internal/dihedral_helpers.h
Library/include/IMP/core/internal/evaluate_distance_pair_score.h
Library/include/IMP/core/internal/graph_base.h
Library/include/IMP/core/internal/grid_close_pairs_impl.h
Library/include/IMP/core/internal/hierarchy_helpers.h
Library/include/IMP/core/internal/incremental_scoring_function.h
Library/include/IMP/core/internal/remove_pointers.h
Library/include/IMP/core/internal/rigid_bodies.h
Library/include/IMP/core/internal/rigid_body_tree.h
Library/include/IMP/core/internal/sinks.h
Library/include/IMP/core/internal/truncated_harmonic.h
Library/include/IMP/core/internal/tunneler_helpers.h
Library/include/IMP/core/model_statistics.h
Library/include/IMP/core/pair_predicates.h
Library/include/IMP/core/predicates.h
Library/include/IMP/core/provenance.h
Library/include/IMP/core/python_only.h
Library/include/IMP/core/quad_predicates.h
Library/include/IMP/core/rigid_bodies.h
Library/include/IMP/core/rigid_body_geometries.h
Library/include/IMP/core/singleton_predicates.h
Library/include/IMP/core/symmetry.h
Library/include/IMP/core/triplet_predicates.h
Library/include/IMP/core/utility.h
Library/include/IMP/decorator_macros.h
Library/include/IMP/dependency_graph.h
Library/include/IMP/deprecation.h
Library/include/IMP/deprecation_macros.h
Library/include/IMP/display.h
Library/include/IMP/display/Color.h
Library/include/IMP/display/Colored.h
Library/include/IMP/display/FilterGeometry.h
Library/include/IMP/display/GeometryProcessor.h
Library/include/IMP/display/GeometrySet.h
Library/include/IMP/display/LogOptimizerState.h
Library/include/IMP/display/PymolWriter.h
Library/include/IMP/display/Writer.h
Library/include/IMP/display/declare_Geometry.h
Library/include/IMP/display/display_config.h
Library/include/IMP/display/display_macros.h
Library/include/IMP/display/geometry.h
Library/include/IMP/display/geometry_macros.h
Library/include/IMP/display/internal/utility.h
Library/include/IMP/display/internal/writers.h
Library/include/IMP/display/particle_geometry.h
Library/include/IMP/display/primitive_geometries.h
Library/include/IMP/display/python_only.h
Library/include/IMP/display/restraint_geometry.h
Library/include/IMP/display/writer_macros.h
Library/include/IMP/domino.h
Library/include/IMP/domino/Assignment.h
Library/include/IMP/domino/BranchAndBoundSampler.h
Library/include/IMP/domino/DependencyScoreState.h
Library/include/IMP/domino/DiscreteSampler.h
Library/include/IMP/domino/DominoSampler.h
Library/include/IMP/domino/Order.h
Library/include/IMP/domino/Slice.h
Library/include/IMP/domino/Subset.h
Library/include/IMP/domino/analysis.h
Library/include/IMP/domino/assignment_containers.h
Library/include/IMP/domino/assignment_tables.h
Library/include/IMP/domino/domino_config.h
Library/include/IMP/domino/domino_macros.h
Library/include/IMP/domino/interactive.h
Library/include/IMP/domino/internal/inference_utility.h
Library/include/IMP/domino/internal/maximal_cliques.h
Library/include/IMP/domino/internal/tree_inference.h
Library/include/IMP/domino/particle_states.h
Library/include/IMP/domino/subset_filters.h
Library/include/IMP/domino/subset_graphs.h
Library/include/IMP/domino/subset_scores.h
Library/include/IMP/domino/utility.h
Library/include/IMP/doxygen_macros.h
Library/include/IMP/em.h
Library/include/IMP/em/BayesEM3D.h
Library/include/IMP/em/CoarseCC.h
Library/include/IMP/em/CoarseCCatIntervals.h
Library/include/IMP/em/CoarseConvolution.h
Library/include/IMP/em/DensityFillingRestraint.h
Library/include/IMP/em/DensityHeader.h
Library/include/IMP/em/DensityMap.h
Library/include/IMP/em/EMReaderWriter.h
Library/include/IMP/em/EnvelopeFitRestraint.h
Library/include/IMP/em/EnvelopePenetrationRestraint.h
Library/include/IMP/em/EnvelopeScore.h
Library/include/IMP/em/FitRestraint.h
Library/include/IMP/em/FitRestraintBayesEM3D.h
Library/include/IMP/em/ImageHeader.h
Library/include/IMP/em/KernelParameters.h
Library/include/IMP/em/MRCReaderWriter.h
Library/include/IMP/em/MapDistanceTransform.h
Library/include/IMP/em/MapReaderWriter.h
Library/include/IMP/em/PCAAligner.h
Library/include/IMP/em/PCAFitRestraint.h
Library/include/IMP/em/SampledDensityMap.h
Library/include/IMP/em/SpiderHeader.h
Library/include/IMP/em/SpiderReaderWriter.h
Library/include/IMP/em/SurfaceShellDensityMap.h
Library/include/IMP/em/Voxel.h
Library/include/IMP/em/XplorReaderWriter.h
Library/include/IMP/em/converters.h
Library/include/IMP/em/def.h
Library/include/IMP/em/density_map_volumetrics.h
Library/include/IMP/em/density_utilities.h
Library/include/IMP/em/em_config.h
Library/include/IMP/em/embedding.h
Library/include/IMP/em/envelope_penetration.h
Library/include/IMP/em/exp.h
Library/include/IMP/em/header_converters.h
Library/include/IMP/em/internal/EMHeader.h
Library/include/IMP/em/internal/MRCHeader.h
Library/include/IMP/em/internal/RadiusDependentKernelParameters.h
Library/include/IMP/em/internal/XplorHeader.h
Library/include/IMP/em/masking.h
Library/include/IMP/em/rigid_fitting.h
Library/include/IMP/em2d.h
Library/include/IMP/em2d/CenteredMat.h
Library/include/IMP/em2d/CollisionCrossSection.h
Library/include/IMP/em2d/DummyRestraint.h
Library/include/IMP/em2d/Em2DRestraint.h
Library/include/IMP/em2d/FFToperations.h
Library/include/IMP/em2d/Fine2DRegistrationRestraint.h
Library/include/IMP/em2d/Image.h
Library/include/IMP/em2d/ImageReaderWriter.h
Library/include/IMP/em2d/JPGImageReaderWriter.h
Library/include/IMP/em2d/PCAFitRestraint.h
Library/include/IMP/em2d/PolarResamplingParameters.h
Library/include/IMP/em2d/ProjectionFinder.h
Library/include/IMP/em2d/ProjectionMask.h
Library/include/IMP/em2d/ProjectionParameters.h
Library/include/IMP/em2d/RegistrationResult.h
Library/include/IMP/em2d/RelativePositionMover.h
Library/include/IMP/em2d/RigidBodiesImageFitRestraint.h
Library/include/IMP/em2d/SpiderImageReaderWriter.h
Library/include/IMP/em2d/TIFFImageReaderWriter.h
Library/include/IMP/em2d/align2D.h
Library/include/IMP/em2d/domino_filter_tables.h
Library/include/IMP/em2d/domino_filters.h
Library/include/IMP/em2d/domino_particle_states.h
Library/include/IMP/em2d/em2d_config.h
Library/include/IMP/em2d/filenames_manipulation.h
Library/include/IMP/em2d/hierarchical_clustering.h
Library/include/IMP/em2d/image_processing.h
Library/include/IMP/em2d/internal/Image2D.h
Library/include/IMP/em2d/internal/ImageTransform.h
Library/include/IMP/em2d/internal/Projection.h
Library/include/IMP/em2d/internal/ProjectionSphere.h
Library/include/IMP/em2d/internal/Projector.h
Library/include/IMP/em2d/internal/clustering_helper.h
Library/include/IMP/em2d/internal/image_processing_helper.h
Library/include/IMP/em2d/internal/rotation_helper.h
Library/include/IMP/em2d/model_interaction.h
Library/include/IMP/em2d/opencv_interface.h
Library/include/IMP/em2d/project.h
Library/include/IMP/em2d/scores2D.h
Library/include/IMP/enums.h
Library/include/IMP/example.h
Library/include/IMP/example/ExampleComplexRestraint.h
Library/include/IMP/example/ExampleConstraint.h
Library/include/IMP/example/ExampleDecorator.h
Library/include/IMP/example/ExampleObject.h
Library/include/IMP/example/ExamplePairScore.h
Library/include/IMP/example/ExampleRestraint.h
Library/include/IMP/example/ExampleSingletonModifier.h
Library/include/IMP/example/ExampleSubsetFilterTable.h
Library/include/IMP/example/ExampleTemplateClass.h
Library/include/IMP/example/ExampleUnaryFunction.h
Library/include/IMP/example/complex_assembly.h
Library/include/IMP/example/counting.h
Library/include/IMP/example/creating_restraints.h
Library/include/IMP/example/example_config.h
Library/include/IMP/example/optimizing.h
Library/include/IMP/example/randomizing.h
Library/include/IMP/exception.h
Library/include/IMP/file.h
Library/include/IMP/flags.h
Library/include/IMP/foxs.h
Library/include/IMP/foxs/foxs_config.h
Library/include/IMP/foxs/internal/ColorCoder.h
Library/include/IMP/foxs/internal/Gnuplot.h
Library/include/IMP/foxs/internal/JmolWriter.h
Library/include/IMP/functor.h
Library/include/IMP/generic.h
Library/include/IMP/graph_macros.h
Library/include/IMP/gsl.h
Library/include/IMP/gsl/ConjugateGradients.h
Library/include/IMP/gsl/GSLOptimizer.h
Library/include/IMP/gsl/QuasiNewton.h
Library/include/IMP/gsl/Simplex.h
Library/include/IMP/gsl/gsl_config.h
Library/include/IMP/gsl/internal/helpers.h
Library/include/IMP/hash.h
Library/include/IMP/hash_macros.h
Library/include/IMP/input_output.h
Library/include/IMP/integrative_docking.h
Library/include/IMP/integrative_docking/integrative_docking_config.h
Library/include/IMP/integrative_docking/internal/CrossLink.h
Library/include/IMP/integrative_docking/internal/CrossLinkingResult.h
Library/include/IMP/integrative_docking/internal/DockingDistanceRestraint.h
Library/include/IMP/integrative_docking/internal/EM2DFitResult.h
Library/include/IMP/integrative_docking/internal/EM3DFitResult.h
Library/include/IMP/integrative_docking/internal/EMFit.h
Library/include/IMP/integrative_docking/internal/MapScorer.h
Library/include/IMP/integrative_docking/internal/NMR_RTCResult.h
Library/include/IMP/integrative_docking/internal/Normalization.h
Library/include/IMP/integrative_docking/internal/ResidueContent.h
Library/include/IMP/integrative_docking/internal/Result.h
Library/include/IMP/integrative_docking/internal/SAXSResult.h
Library/include/IMP/integrative_docking/internal/SOAPResult.h
Library/include/IMP/integrative_docking/internal/helpers.h
Library/include/IMP/integrative_docking/internal/soap_score.h
Library/include/IMP/internal/AccumulatorScoreModifier.h
Library/include/IMP/internal/AttributeTable.h
Library/include/IMP/internal/ContainerConstraint.h
Library/include/IMP/internal/ContainerRestraint.h
Library/include/IMP/internal/ContainerScoreState.h
Library/include/IMP/internal/DynamicListContainer.h
Library/include/IMP/internal/ExponentialNumber.h
Library/include/IMP/internal/Flag.h
Library/include/IMP/internal/IndexingIterator.h
Library/include/IMP/internal/ListLikeContainer.h
Library/include/IMP/internal/NestedIterator.h
Library/include/IMP/internal/PointerBase.h
Library/include/IMP/internal/PrefixStream.h
Library/include/IMP/internal/RestraintsScoringFunction.h
Library/include/IMP/internal/StaticListContainer.h
Library/include/IMP/internal/TupleConstraint.h
Library/include/IMP/internal/TupleRestraint.h
Library/include/IMP/internal/Unit.h
Library/include/IMP/internal/Vector.h
Library/include/IMP/internal/attribute_tables.h
Library/include/IMP/internal/base_graph_utility.h
Library/include/IMP/internal/base_static.h
Library/include/IMP/internal/cache.h
Library/include/IMP/internal/constants.h
Library/include/IMP/internal/container_helpers.h
Library/include/IMP/internal/create_decomposition.h
Library/include/IMP/internal/cuda_helper_functions.h
Library/include/IMP/internal/deprecation.h
Library/include/IMP/internal/directories.h
Library/include/IMP/internal/eat.h
Library/include/IMP/internal/evaluate_utility.h
Library/include/IMP/internal/functors.h
Library/include/IMP/internal/graph_utility.h
Library/include/IMP/internal/ifile.h
Library/include/IMP/internal/input_output_exception.h
Library/include/IMP/internal/key_helpers.h
Library/include/IMP/internal/log.h
Library/include/IMP/internal/log_stream.h
Library/include/IMP/internal/pdb.h
Library/include/IMP/internal/random_number_generation_boost.h
Library/include/IMP/internal/random_number_generation_cuda.h
Library/include/IMP/internal/range.h
Library/include/IMP/internal/restraint_evaluation.h
Library/include/IMP/internal/scoring_functions.h
Library/include/IMP/internal/static.h
Library/include/IMP/internal/swig.h
Library/include/IMP/internal/swig_base.h
Library/include/IMP/internal/swig_helpers.h
Library/include/IMP/internal/swig_helpers_base.h
Library/include/IMP/internal/units.h
Library/include/IMP/internal/utility.h
Library/include/IMP/io.h
Library/include/IMP/isd.h
Library/include/IMP/isd/AmbiguousNOERestraint.h
Library/include/IMP/isd/AmbiguousRestraint.h
Library/include/IMP/isd/AtomicCrossLinkMSRestraint.h
Library/include/IMP/isd/CrossLinkData.h
Library/include/IMP/isd/CrossLinkMSRestraint.h
Library/include/IMP/isd/CysteineCrossLinkData.h
Library/include/IMP/isd/CysteineCrossLinkRestraint.h
Library/include/IMP/isd/FNormal.h
Library/include/IMP/isd/FStudentT.h
Library/include/IMP/isd/FretData.h
Library/include/IMP/isd/FretRestraint.h
Library/include/IMP/isd/GammaPrior.h
Library/include/IMP/isd/GaussianAnchorEMRestraint.h
Library/include/IMP/isd/GaussianEMRestraint.h
Library/include/IMP/isd/GaussianProcessInterpolation.h
Library/include/IMP/isd/GaussianProcessInterpolationRestraint.h
Library/include/IMP/isd/GaussianRestraint.h
Library/include/IMP/isd/HybridMonteCarlo.h
Library/include/IMP/isd/ISDRestraint.h
Library/include/IMP/isd/JeffreysRestraint.h
Library/include/IMP/isd/LogWrapper.h
Library/include/IMP/isd/LognormalAmbiguousRestraint.h
Library/include/IMP/isd/LognormalRestraint.h
Library/include/IMP/isd/MarginalHBondRestraint.h
Library/include/IMP/isd/MarginalNOERestraint.h
Library/include/IMP/isd/MolecularDynamics.h
Library/include/IMP/isd/MolecularDynamicsMover.h
Library/include/IMP/isd/MultivariateFNormalSufficient.h
Library/include/IMP/isd/NOERestraint.h
Library/include/IMP/isd/NormalSigmaPCRestraint.h
Library/include/IMP/isd/Nuisance.h
Library/include/IMP/isd/PenalizedComplexityPrior.h
Library/include/IMP/isd/RepulsiveDistancePairScore.h
Library/include/IMP/isd/Scale.h
Library/include/IMP/isd/StudentTRestraint.h
Library/include/IMP/isd/Switching.h
Library/include/IMP/isd/TALOSRestraint.h
Library/include/IMP/isd/UniformPrior.h
Library/include/IMP/isd/Weight.h
Library/include/IMP/isd/WeightMover.h
Library/include/IMP/isd/WeightRestraint.h
Library/include/IMP/isd/bivariate_functions.h
Library/include/IMP/isd/distribution.h
Library/include/IMP/isd/em_utilities.h
Library/include/IMP/isd/internal/cg_eigen.h
Library/include/IMP/isd/internal/timer.h
Library/include/IMP/isd/isd_config.h
Library/include/IMP/isd/univariate_functions.h
Library/include/IMP/isd/vonMises.h
Library/include/IMP/isd/vonMisesKappaConjugateRestraint.h
Library/include/IMP/isd/vonMisesKappaJeffreysRestraint.h
Library/include/IMP/isd/vonMisesSufficient.h
Library/include/IMP/kernel_config.h
Library/include/IMP/kinematics.h
Library/include/IMP/kinematics/CCDLoopClosure.h
Library/include/IMP/kinematics/CompositeJoint.h
Library/include/IMP/kinematics/DOF.h
Library/include/IMP/kinematics/DOFValues.h
Library/include/IMP/kinematics/DOFsSampler.h
Library/include/IMP/kinematics/DihedralMover.h
Library/include/IMP/kinematics/FibrilSampler.h
Library/include/IMP/kinematics/Joint.h
Library/include/IMP/kinematics/KinematicForest.h
Library/include/IMP/kinematics/KinematicForestScoreState.h
Library/include/IMP/kinematics/KinematicNode.h
Library/include/IMP/kinematics/PrismaticJoint.h
Library/include/IMP/kinematics/ProteinKinematics.h
Library/include/IMP/kinematics/RMSDClustering.h
Library/include/IMP/kinematics/RRT.h
Library/include/IMP/kinematics/RevoluteJointMover.h
Library/include/IMP/kinematics/TransformationJoint.h
Library/include/IMP/kinematics/UniformBackboneSampler.h
Library/include/IMP/kinematics/directional_DOFs.h
Library/include/IMP/kinematics/helpers.h
Library/include/IMP/kinematics/internal/graph_helpers.h
Library/include/IMP/kinematics/kinematics_config.h
Library/include/IMP/kinematics/local_planners.h
Library/include/IMP/kinematics/revolute_joints.h
Library/include/IMP/kmeans.h
Library/include/IMP/kmeans/KMeans.h
Library/include/IMP/kmeans/internal/KCtree.h
Library/include/IMP/kmeans/internal/KCutil.h
Library/include/IMP/kmeans/internal/KM_ANN.h
Library/include/IMP/kmeans/internal/KMcenters.h
Library/include/IMP/kmeans/internal/KMdata.h
Library/include/IMP/kmeans/internal/KMeans.h
Library/include/IMP/kmeans/internal/KMfilterCenters.h
Library/include/IMP/kmeans/internal/KMlocal.h
Library/include/IMP/kmeans/internal/KMrand.h
Library/include/IMP/kmeans/internal/KMterm.h
Library/include/IMP/kmeans/kmeans_config.h
Library/include/IMP/live_objects.h
Library/include/IMP/log.h
Library/include/IMP/log_macros.h
Library/include/IMP/macros.h
Library/include/IMP/math.h
Library/include/IMP/misc.h
Library/include/IMP/misc/CommonEndpointPairFilter.h
Library/include/IMP/misc/CustomXYZR.h
Library/include/IMP/misc/DecayPairContainerOptimizerState.h
Library/include/IMP/misc/FreelyJointedChain.h
Library/include/IMP/misc/LogPairScore.h
Library/include/IMP/misc/LowestRefinedPairScore.h
Library/include/IMP/misc/MetricClosePairsFinder.h
Library/include/IMP/misc/SoftCylinderPairScore.h
Library/include/IMP/misc/StateAdaptor.h
Library/include/IMP/misc/WormLikeChain.h
Library/include/IMP/misc/misc_config.h
Library/include/IMP/model_object_helpers.h
Library/include/IMP/modeller.h
Library/include/IMP/modeller/modeller_config.h
Library/include/IMP/mpi.h
Library/include/IMP/mpi/ReplicaExchange.h
Library/include/IMP/mpi/internal/mpi_helpers.h
Library/include/IMP/mpi/mpi_config.h
Library/include/IMP/multi_state.h
Library/include/IMP/multi_state/EnsembleGenerator.h
Library/include/IMP/multi_state/MultiStateModel.h
Library/include/IMP/multi_state/MultiStateModelScore.h
Library/include/IMP/multi_state/SAXSMultiStateModelScore.h
Library/include/IMP/multi_state/multi_state_config.h
Library/include/IMP/multi_state/stat_helpers.h
Library/include/IMP/multifit.h
Library/include/IMP/multifit/AlignmentParams.h
Library/include/IMP/multifit/ComplementarityRestraint.h
Library/include/IMP/multifit/DataPointsAssignment.h
Library/include/IMP/multifit/DensityDataPoints.h
Library/include/IMP/multifit/FittingSolutionRecord.h
Library/include/IMP/multifit/GeometricHash.h
Library/include/IMP/multifit/RadiusOfGyrationRestraint.h
Library/include/IMP/multifit/RigidLeavesRefiner.h
Library/include/IMP/multifit/SettingsData.h
Library/include/IMP/multifit/WeightedExcludedVolumeRestraint.h
Library/include/IMP/multifit/anchor_graph.h
Library/include/IMP/multifit/anchor_utilities.h
Library/include/IMP/multifit/anchors_reader.h
Library/include/IMP/multifit/coarse_molecule.h
Library/include/IMP/multifit/connolly_surface.h
Library/include/IMP/multifit/density_analysis.h
Library/include/IMP/multifit/ensemble_analysis.h
Library/include/IMP/multifit/fft_based_rigid_fitting.h
Library/include/IMP/multifit/fitting_solutions_reader_writer.h
Library/include/IMP/multifit/fitting_states.h
Library/include/IMP/multifit/fitting_tools.h
Library/include/IMP/multifit/fitting_utils.h
Library/include/IMP/multifit/internal/FFTWGrid.h
Library/include/IMP/multifit/internal/FFTWPlan.h
Library/include/IMP/multifit/internal/GeometricComplementarity.h
Library/include/IMP/multifit/internal/SurfaceMatching.h
Library/include/IMP/multifit/internal/fft_fitting_utils.h
Library/include/IMP/multifit/internal/reader_writer_utility.h
Library/include/IMP/multifit/merge_tree_utils.h
Library/include/IMP/multifit/multifit_config.h
Library/include/IMP/multifit/path_reader_writer.h
Library/include/IMP/multifit/pca_based_rigid_fitting.h
Library/include/IMP/multifit/protein_anchors_mapping_reader.h
Library/include/IMP/multifit/proteomics_em_alignment_atomic.h
Library/include/IMP/multifit/proteomics_reader.h
Library/include/IMP/multifit/weighted_excluded_volume.h
Library/include/IMP/npc.h
Library/include/IMP/npc/CompositeRestraint.h
Library/include/IMP/npc/MinimumSphereDistancePairScore.h
Library/include/IMP/npc/ProteinLocalizationRestraint.h
Library/include/IMP/npc/npc_config.h
Library/include/IMP/npctransport.h
Library/include/IMP/npctransport/AnchorToCylindricalPorePairScore.h
Library/include/IMP/npctransport/Avro2PBReader.h
Library/include/IMP/npctransport/AvroDataFileData.h
Library/include/IMP/npctransport/BipartitePairsStatisticsOptimizerState.h
Library/include/IMP/npctransport/BodyStatisticsOptimizerState.h
Library/include/IMP/npctransport/BrownianDynamicsTAMDWithSlabSupport.h
Library/include/IMP/npctransport/ChainStatisticsOptimizerState.h
Library/include/IMP/npctransport/ExcludeZRangeSingletonScore.h
Library/include/IMP/npctransport/FGChain.h
Library/include/IMP/npctransport/GlobalStatisticsOptimizerState.h
Library/include/IMP/npctransport/HarmonicSpringSingletonScore.h
Library/include/IMP/npctransport/Parameter.h
Library/include/IMP/npctransport/ParticleFactory.h
Library/include/IMP/npctransport/ParticleTransportStatisticsOptimizerState.h
Library/include/IMP/npctransport/PoreRadiusSingletonScore.h
Library/include/IMP/npctransport/RelaxingSpring.h
Library/include/IMP/npctransport/Scoring.h
Library/include/IMP/npctransport/SimulationData.h
Library/include/IMP/npctransport/SitesGeometry.h
Library/include/IMP/npctransport/SitesPairScore.h
Library/include/IMP/npctransport/SitesPairScoreParameters.h
Library/include/IMP/npctransport/SlabWithCylindricalPore.h
Library/include/IMP/npctransport/SlabWithCylindricalPoreGeometry.h
Library/include/IMP/npctransport/SlabWithCylindricalPorePairScore.h
Library/include/IMP/npctransport/SlabWithPore.h
Library/include/IMP/npctransport/SlabWithToroidalPore.h
Library/include/IMP/npctransport/SlabWithToroidalPoreGeometry.h
Library/include/IMP/npctransport/SlabWithToroidalPorePairScore.h
Library/include/IMP/npctransport/Statistics.h
Library/include/IMP/npctransport/Transporting.h
Library/include/IMP/npctransport/ZBiasSingletonScore.h
Library/include/IMP/npctransport/automatic_parameters.h
Library/include/IMP/npctransport/avro.h
Library/include/IMP/npctransport/enums.h
Library/include/IMP/npctransport/functor_linear_distance_pair_scores.h
Library/include/IMP/npctransport/functor_linear_distance_pair_scores_typedefs.h
Library/include/IMP/npctransport/harmonic_distance_pair_scores.h
Library/include/IMP/npctransport/initialize_positions.h
Library/include/IMP/npctransport/internal/MarkovStates.h
Library/include/IMP/npctransport/internal/RigidBodyInfo.h
Library/include/IMP/npctransport/internal/TAMDChain.h
Library/include/IMP/npctransport/internal/boost_main.h
Library/include/IMP/npctransport/internal/initialize_positions_RAIIs.h
Library/include/IMP/npctransport/internal/sites.h
Library/include/IMP/npctransport/internal/util.h
Library/include/IMP/npctransport/io.h
Library/include/IMP/npctransport/linear_distance_pair_scores.h
Library/include/IMP/npctransport/main.h
Library/include/IMP/npctransport/npctransport_config.h
Library/include/IMP/npctransport/npctransport_proto.fwd.h
Library/include/IMP/npctransport/protobuf.h
Library/include/IMP/npctransport/randomize_particles.h
Library/include/IMP/npctransport/rmf_links.h
Library/include/IMP/npctransport/typedefs.h
Library/include/IMP/npctransport/util.h
Library/include/IMP/nullptr.h
Library/include/IMP/nullptr_macros.h
Library/include/IMP/object_cast.h
Library/include/IMP/object_macros.h
Library/include/IMP/pair_macros.h
Library/include/IMP/particle_index.h
Library/include/IMP/piecewise_linear_distribution.h
Library/include/IMP/pmi.h
Library/include/IMP/pmi/CompositeRestraint.h
Library/include/IMP/pmi/MembraneRestraint.h
Library/include/IMP/pmi/Resolution.h
Library/include/IMP/pmi/Symmetric.h
Library/include/IMP/pmi/TransformMover.h
Library/include/IMP/pmi/Uncertainty.h
Library/include/IMP/pmi/pmi_config.h
Library/include/IMP/pmi/utilities.h
Library/include/IMP/pmi1.h
Library/include/IMP/pmi1/CompositeRestraint.h
Library/include/IMP/pmi1/InternalCoordinatesConstraint.h
Library/include/IMP/pmi1/MembraneRestraint.h
Library/include/IMP/pmi1/Resolution.h
Library/include/IMP/pmi1/SigmoidRestraintSphere.h
Library/include/IMP/pmi1/Symmetric.h
Library/include/IMP/pmi1/TransformMover.h
Library/include/IMP/pmi1/Uncertainty.h
Library/include/IMP/pmi1/pmi1_config.h
Library/include/IMP/pmi1/utilities.h
Library/include/IMP/python_only.h
Library/include/IMP/quad_macros.h
Library/include/IMP/raii_macros.h
Library/include/IMP/random.h
Library/include/IMP/random_utils.h
Library/include/IMP/ref_counted_macros.h
Library/include/IMP/rmf.h
Library/include/IMP/rmf/HierarchyLoadLink.h
Library/include/IMP/rmf/HierarchySaveLink.h
Library/include/IMP/rmf/RMFWriter.h
Library/include/IMP/rmf/SaveOptimizerState.h
Library/include/IMP/rmf/associations.h
Library/include/IMP/rmf/atom_io.h
Library/include/IMP/rmf/atom_links.h
Library/include/IMP/rmf/frames.h
Library/include/IMP/rmf/geometry_io.h
Library/include/IMP/rmf/internal/atom_links_coordinate_helpers.h
Library/include/IMP/rmf/internal/atom_links_gaussians.h
Library/include/IMP/rmf/internal/atom_links_rigid_bodies.h
Library/include/IMP/rmf/internal/atom_links_static.h
Library/include/IMP/rmf/internal/atom_links_xyzs.h
Library/include/IMP/rmf/internal/hierarchy_links_helpers.h
Library/include/IMP/rmf/internal/link_helpers.h
Library/include/IMP/rmf/link_macros.h
Library/include/IMP/rmf/links.h
Library/include/IMP/rmf/particle_io.h
Library/include/IMP/rmf/restraint_io.h
Library/include/IMP/rmf/rmf_config.h
Library/include/IMP/rmf/simple_links.h
Library/include/IMP/rotamer.h
Library/include/IMP/rotamer/RotamerCalculator.h
Library/include/IMP/rotamer/RotamerLibrary.h
Library/include/IMP/rotamer/rotamer_config.h
Library/include/IMP/saxs.h
Library/include/IMP/saxs/ChiFreeScore.h
Library/include/IMP/saxs/ChiScore.h
Library/include/IMP/saxs/ChiScoreLog.h
Library/include/IMP/saxs/DerivativeCalculator.h
Library/include/IMP/saxs/Distribution.h
Library/include/IMP/saxs/FitParameters.h
Library/include/IMP/saxs/FormFactorTable.h
Library/include/IMP/saxs/Profile.h
Library/include/IMP/saxs/ProfileClustering.h
Library/include/IMP/saxs/ProfileFitter.h
Library/include/IMP/saxs/RadiusOfGyrationRestraint.h
Library/include/IMP/saxs/RatioVolatilityScore.h
Library/include/IMP/saxs/Restraint.h
Library/include/IMP/saxs/RigidBodiesProfileHandler.h
Library/include/IMP/saxs/SolventAccessibleSurface.h
Library/include/IMP/saxs/WeightedFitParameters.h
Library/include/IMP/saxs/WeightedProfileFitter.h
Library/include/IMP/saxs/internal/exp_function.h
Library/include/IMP/saxs/internal/sinc_function.h
Library/include/IMP/saxs/internal/variance_helpers.h
Library/include/IMP/saxs/nnls.h
Library/include/IMP/saxs/saxs_config.h
Library/include/IMP/saxs/utility.h
Library/include/IMP/scoped.h
Library/include/IMP/score_functor.h
Library/include/IMP/score_functor/AddScores.h
Library/include/IMP/score_functor/DistancePairScore.h
Library/include/IMP/score_functor/Dope.h
Library/include/IMP/score_functor/Harmonic.h
Library/include/IMP/score_functor/HarmonicLowerBound.h
Library/include/IMP/score_functor/HarmonicUpperBound.h
Library/include/IMP/score_functor/LinearLowerBound.h
Library/include/IMP/score_functor/LoopStatistical.h
Library/include/IMP/score_functor/OpenCubicSpline.h
Library/include/IMP/score_functor/OrientedSoap.h
Library/include/IMP/score_functor/PointToSphereDistance.h
Library/include/IMP/score_functor/Score.h
Library/include/IMP/score_functor/ScoreUnaryFunction.h
Library/include/IMP/score_functor/Shift.h
Library/include/IMP/score_functor/SingletonStatistical.h
Library/include/IMP/score_functor/Soap.h
Library/include/IMP/score_functor/SphereDistance.h
Library/include/IMP/score_functor/Statistical.h
Library/include/IMP/score_functor/SurfaceDistancePairScore.h
Library/include/IMP/score_functor/UnaryFunctionEvaluate.h
Library/include/IMP/score_functor/WeightScore.h
Library/include/IMP/score_functor/distance_pair_score_macros.h
Library/include/IMP/score_functor/internal/PMFTable.h
Library/include/IMP/score_functor/internal/RawOpenCubicSpline.h
Library/include/IMP/score_functor/internal/SASTable.h
Library/include/IMP/score_functor/internal/direction_helpers.h
Library/include/IMP/score_functor/internal/soap_hdf5.h
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Library/include/IMP/score_functor/surface_distance_pair_score_macros.h
Library/include/IMP/set_map_macros.h
Library/include/IMP/showable_macros.h
Library/include/IMP/singleton_macros.h
Library/include/IMP/spb.h
Library/include/IMP/spb/AttributeDistancePairScore.h
Library/include/IMP/spb/BoxedMover.h
Library/include/IMP/spb/CellMover.h
Library/include/IMP/spb/ChiSquareMetric.h
Library/include/IMP/spb/ContactMapMetric.h
Library/include/IMP/spb/DiameterRgyrRestraint.h
Library/include/IMP/spb/DistanceRMSDMetric.h
Library/include/IMP/spb/DistanceTerminiRestraint.h
Library/include/IMP/spb/EM2DRestraint.h
Library/include/IMP/spb/Gaussian.h
Library/include/IMP/spb/HelixDecorator.h
Library/include/IMP/spb/ISDRestraint.h
Library/include/IMP/spb/KinkPairScore.h
Library/include/IMP/spb/MolecularDynamicsWithWte.h
Library/include/IMP/spb/MonteCarloWithWte.h
Library/include/IMP/spb/NuisanceRangeModifier.h
Library/include/IMP/spb/PbcBoxedMover.h
Library/include/IMP/spb/PbcBoxedRigidBodyMover.h
Library/include/IMP/spb/RMSDMetric.h
Library/include/IMP/spb/RigidBodyNewMover.h
Library/include/IMP/spb/RigidBodyPackingScore.h
Library/include/IMP/spb/SameParticlePairFilter.h
Library/include/IMP/spb/SameRigidBodyPairFilter.h
Library/include/IMP/spb/TiltSingletonScore.h
Library/include/IMP/spb/TransformationSymmetry.h
Library/include/IMP/spb/TwoStateGoModelRestraint.h
Library/include/IMP/spb/UniformBoundedRestraint.h
Library/include/IMP/spb/pt_stuff.h
Library/include/IMP/spb/spb_ISD_particles.h
Library/include/IMP/spb/spb_assemble_restraints.h
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Library/include/IMP/spb/spb_parser.h
Library/include/IMP/spb/spb_representation.h
Library/include/IMP/spb/spb_restraint.h
Library/include/IMP/spb/spb_sampler.h
Library/include/IMP/statistics.h
Library/include/IMP/statistics/ChiSquareMetric.h
Library/include/IMP/statistics/Embedding.h
Library/include/IMP/statistics/HistogramD.h
Library/include/IMP/statistics/Metric.h
Library/include/IMP/statistics/PartitionalClustering.h
Library/include/IMP/statistics/PartitionalClusteringWithCenter.h
Library/include/IMP/statistics/RecursivePartitionalClusteringEmbedding.h
Library/include/IMP/statistics/RecursivePartitionalClusteringMetric.h
Library/include/IMP/statistics/embeddings.h
Library/include/IMP/statistics/internal/ClusteringEngine.h
Library/include/IMP/statistics/internal/DataPoints.h
Library/include/IMP/statistics/internal/KMCenters.h
Library/include/IMP/statistics/internal/KMCentersNode.h
Library/include/IMP/statistics/internal/KMCentersNodeLeaf.h
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Library/include/IMP/statistics/internal/KMCentersTree.h
Library/include/IMP/statistics/internal/KMData.h
Library/include/IMP/statistics/internal/KMFilterCenters.h
Library/include/IMP/statistics/internal/KMLProxy.h
Library/include/IMP/statistics/internal/KMLocalSearch.h
Library/include/IMP/statistics/internal/KMLocalSearchLloyd.h
Library/include/IMP/statistics/internal/KMRectangle.h
Library/include/IMP/statistics/internal/KMTerminationCondition.h
Library/include/IMP/statistics/internal/TrivialPartitionalClustering.h
Library/include/IMP/statistics/internal/VQClustering.h
Library/include/IMP/statistics/internal/centrality_clustering.h
Library/include/IMP/statistics/internal/histogram.h
Library/include/IMP/statistics/internal/random_generator.h
Library/include/IMP/statistics/metric_clustering.h
Library/include/IMP/statistics/metrics.h
Library/include/IMP/statistics/point_clustering.h
Library/include/IMP/statistics/python_only.h
Library/include/IMP/statistics/statistics_config.h
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Library/include/IMP/swap_macros.h
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Library/include/IMP/symmetry.h
Library/include/IMP/symmetry/BallMover.h
Library/include/IMP/symmetry/RigidBodyMover.h
Library/include/IMP/symmetry/symmetry_config.h
Library/include/IMP/test/test_macros.h
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