LICENSE.txt
MANIFEST.in
README.md
setup.cfg
setup.py
dadi/Demographics1D.py
dadi/Demographics2D.py
dadi/Godambe.py
dadi/Inference.py
dadi/Integration.py
dadi/Misc.py
dadi/NLopt_mod.py
dadi/Numerics.py
dadi/PhiManip.py
dadi/Plotting.py
dadi/Spectrum_mod.py
dadi/__init__.py
dadi/integration1D.c
dadi/integration2D.c
dadi/integration3D.c
dadi/integration4D.c
dadi/integration5D.c
dadi/integration_c.pyf
dadi/integration_cmodule.c
dadi/integration_shared.c
dadi/integration_shared.h
dadi/tridiag.c
dadi/tridiag.h
dadi/tridiag.pyf
dadi/tridiagmodule.c
dadi.egg-info/PKG-INFO
dadi.egg-info/SOURCES.txt
dadi.egg-info/dependency_links.txt
dadi.egg-info/requires.txt
dadi.egg-info/top_level.txt
dadi/DFE/PDFs.c
dadi/DFE/Cache1D_mod.py
dadi/DFE/Cache2D_mod.py
dadi/DFE/DemogSelModels.py
dadi/DFE/PDFs.c
dadi/DFE/PDFs.py
dadi/DFE/PDFs.pyf
dadi/DFE/PDFs_cmodule.c
dadi/DFE/Plotting.py
dadi/DFE/__init__.py
dadi/Triallele/TriSpectrum_mod.py
dadi/Triallele/__init__.py
dadi/Triallele/demographics.py
dadi/Triallele/integration.py
dadi/Triallele/numerics.py
dadi/Triallele/plotting.py
dadi/Triallele/transition1.pyx
dadi/Triallele/transition12.pyx
dadi/Triallele/transition1D.pyx
dadi/Triallele/transition2.pyx
dadi/TwoLocus/TLSpectrum_mod.py
dadi/TwoLocus/__init__.py
dadi/TwoLocus/demographics.py
dadi/TwoLocus/inference.py
dadi/TwoLocus/integration.py
dadi/TwoLocus/numerics.py
dadi/TwoLocus/plotting.py
dadi/TwoLocus/projection_genotypes.pyx
dadi/TwoLocus/surface_interaction.pyx
dadi/TwoLocus/transition1.pyx
dadi/TwoLocus/transition12.pyx
dadi/TwoLocus/transition13.pyx
dadi/TwoLocus/transition1D.pyx
dadi/TwoLocus/transition2.pyx
dadi/TwoLocus/transition23.pyx
dadi/TwoLocus/transition3.pyx
dadi/cuda/Integration.py
dadi/cuda/__init__.py
dadi/cuda/cusparse.py
dadi/cuda/kernels.cu
dadi/cuda/kernels.py
examples/CUDA/benchmark.py
examples/CUDA/models.py
examples/CUDA/models_moments.py
examples/CUDA/moments_comparison.py
examples/DFE/example.fs
examples/DFE/example1D.py
examples/DFE/example2D.py
examples/Triallele/example_triallele_model.py
examples/Triallele/intervals_nu2.0_tau.1_ns20.txt
examples/Triallele/jenkins_comp.py
examples/Triallele/tree_script.r
examples/Triallele/tri.fs
examples/TwoLocus/example.py
examples/TwoLocus/example_observed_fs.fs
examples/TwoLocus/two_epoch_example.fs
examples/YRI_CEU/YRI_CEU.fs
examples/YRI_CEU/YRI_CEU.py
examples/YRI_CEU/demographic_models.py
examples/YRI_CEU/bootstraps/00.fs
examples/YRI_CEU/bootstraps/01.fs
examples/YRI_CEU/bootstraps/02.fs
examples/YRI_CEU/bootstraps/03.fs
examples/YRI_CEU/bootstraps/04.fs
examples/YRI_CEU/bootstraps/05.fs
examples/YRI_CEU/bootstraps/06.fs
examples/YRI_CEU/bootstraps/07.fs
examples/YRI_CEU/bootstraps/08.fs
examples/YRI_CEU/bootstraps/09.fs
examples/YRI_CEU/bootstraps/10.fs
examples/YRI_CEU/bootstraps/11.fs
examples/YRI_CEU/bootstraps/12.fs
examples/YRI_CEU/bootstraps/13.fs
examples/YRI_CEU/bootstraps/14.fs
examples/YRI_CEU/bootstraps/15.fs
examples/YRI_CEU/bootstraps/16.fs
examples/YRI_CEU/bootstraps/17.fs
examples/YRI_CEU/bootstraps/18.fs
examples/YRI_CEU/bootstraps/19.fs
examples/YRI_CEU/bootstraps/20.fs
examples/YRI_CEU/bootstraps/21.fs
examples/YRI_CEU/bootstraps/22.fs
examples/YRI_CEU/bootstraps/23.fs
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examples/YRI_CEU/bootstraps/47.fs
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examples/YRI_CEU/bootstraps/50.fs
examples/YRI_CEU/bootstraps/51.fs
examples/YRI_CEU/bootstraps/52.fs
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examples/YRI_CEU/bootstraps/54.fs
examples/YRI_CEU/bootstraps/55.fs
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examples/YRI_CEU/bootstraps/57.fs
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examples/YRI_CEU/bootstraps/60.fs
examples/YRI_CEU/bootstraps/61.fs
examples/YRI_CEU/bootstraps/62.fs
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examples/YRI_CEU/bootstraps/64.fs
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examples/YRI_CEU/bootstraps/71.fs
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examples/YRI_CEU/bootstraps/74.fs
examples/YRI_CEU/bootstraps/75.fs
examples/YRI_CEU/bootstraps/76.fs
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examples/YRI_CEU/bootstraps/78.fs
examples/YRI_CEU/bootstraps/79.fs
examples/YRI_CEU/bootstraps/80.fs
examples/YRI_CEU/bootstraps/81.fs
examples/YRI_CEU/bootstraps/82.fs
examples/YRI_CEU/bootstraps/83.fs
examples/YRI_CEU/bootstraps/84.fs
examples/YRI_CEU/bootstraps/85.fs
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examples/YRI_CEU/bootstraps/95.fs
examples/YRI_CEU/bootstraps/96.fs
examples/YRI_CEU/bootstraps/97.fs
examples/YRI_CEU/bootstraps/98.fs
examples/YRI_CEU/bootstraps/99.fs
examples/fs_from_data/1KG.YRI.CEU.biallelic.synonymous.snps.withanc.strict.subset.vcf.gz
examples/fs_from_data/1KG.YRI.CEU.popfile.txt
examples/fs_from_data/fs_from_data.py
tests/IM.fs
tests/admixture_test_manual.py
tests/run_tests.py
tests/test_1D_Integration.py
tests/test_2D_frozen1.fs
tests/test_4D.py
tests/test_5D.py
tests/test_Admixture.py
tests/test_CUDA.py
tests/test_DFE.py
tests/test_Freezing.py
tests/test_Inbreeding.py
tests/test_Optimization.py
tests/test_PhiManip.py
tests/test_Projection.py
tests/test_Results.py
tests/test_Spectrum.py
tests/test_Subgenomes.py
tests/test_Tridiagonal.py
tests/test_combine.py
tests/test_fs_from_data.py
tests/test_phi1D.py
tests/test_data/fitdadi.IM_2D_point_pos_test.fs
tests/test_data/fitdadi.IM_no_ext_test.fs
tests/test_data/fitdadi.IM_point_pos_test.fs
tests/test_data/fitdadi.IM_test.fs