Taxonomic information from around the SOAP web.


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Documentation for package ‘taxizesoap’ version 0.1.0.99

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taxizesoap-package Taxnomic search and phylogeny retrieval for SOAP data sources.
children_s Retrieve immediate children taxa for a given taxon name or ID.
children_s.default Retrieve immediate children taxa for a given taxon name or ID.
children_s.wormsid Retrieve immediate children taxa for a given taxon name or ID.
classification_s Retrieve the taxonomic hierarchy for a given taxon ID.
classification_s.default Retrieve the taxonomic hierarchy for a given taxon ID.
classification_s.wormsid Retrieve the taxonomic hierarchy for a given taxon ID.
comm2sci_s Get scientific names from common names.
get_ids_s Retrieve taxonomic identifiers for a given taxon name.
get_pesiid Get the PESI id for a search term.
get_wormsid Get the WoRMS id for a search term.
myco_search Search Mycobank
pesi Search Pan-European Species directories Infrastructure (PESI)
pesi_distributions Get PESI distributions from GUIDs
pesi_gen_iface Generate PESI function interface.
pesi_guid Get PESI GUID from scientific names
pesi_iface Stored PESI SOAP API interface.
pesi_name_common Get PESI common (vernacular) names from GUIDs
pesi_name_scientific Get PESI scientific names from GUIDs
pesi_records Get PESI records from scientific names, common names, or GUIDs
pesi_search Search for PESI scientific names and associated metadata.
pesi_synonyms Get PESI synonyms from GUIDs
sci2comm_s Get common names from scientific names.
sci2comm_s.default Get common names from scientific names.
sci2comm_s.wormsid Get common names from scientific names.
synonyms_s Retrieve synonyms from various sources given input taxonomic names or identifiers.
synonyms_s.default Retrieve synonyms from various sources given input taxonomic names or identifiers.
synonyms_s.wormsid Retrieve synonyms from various sources given input taxonomic names or identifiers.
taxizesoap Taxnomic search and phylogeny retrieval for SOAP data sources.
worms Search World Register of Marine Species (WoRMS)
worms_children Children search of WoRMS data.
worms_common Common names from WoRMS ID
worms_extid Get external ID from Worms ID
worms_gen_iface Generate WORMS function interface.
worms_hierarchy Hierarchy search
worms_iface Stored WoRMS SOAP API interface.
worms_name Get name from a WORMS id
worms_records Get records by ID, scientific name, common name, date, worms id, or external id.
worms_sources Get sources/references by ID
worms_synonyms Synonyms search of WoRMS data.