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#		example dvc process control file		
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# all lines beginning with a # character are ignored
# some parameters are conditionally required, depending on the setting of other parameters
# for example, if subvol_thresh is off, the threshold description parameters are not required

### file names

#reference_filename	f000_crop/frame_000.mdh		### reference tomography image volume
reference_filename	/media/scratch/Data/DVC/f000_crop/frame_000_f.npy		### reference tomography image volume
#correlate_filename	f010_crop/frame_010.mdh		### correlation tomography image volume
correlate_filename	/media/scratch/Data/DVC/f010_crop/frame_010_f.npy		### reference tomography image volume

point_cloud_filename	central_grid.roi	### file of search point locations
output_filename		central_grid		### base name for output files

### description of the image data files, all must be the same size and structure

vol_bit_depth		8			### 8 or 16
vol_hdr_lngth		96			### fixed-length header size, may be zero
vol_wide		1520			### width in pixels of each slice
vol_high		1257			### height in pixels of each slice
vol_tall		1260			### number of slices in the stack

### parameters defining the subvolumes that will be created at each search point

subvol_geom		sphere			### cube, sphere
subvol_size		80			### side length or diameter, in voxels
subvol_npts		8000			### number of points to distribute within the subvol

subvol_thresh		off			### on or off, evaluate subvolumes based on threshold
#   gray_thresh_min	27			### lower limit of a gray threshold range if subvol_thresh is on
#   gray_thresh_max	127			### upper limit of a gray threshold range if subvol_thresh is on
#   min_vol_fract	0.2			### only search if subvol fraction is greater than

### required parameters defining the basic the search process

disp_max		38			### in voxels, used for range checking and global search limits
num_srch_dof		6			### 3, 6, or 12
obj_function		znssd			### sad, ssd, zssd, nssd, znssd 
interp_type		tricubic		### trilinear, tricubic

### optional parameters tuning and refining the search process

rigid_trans		34.0 4.0 0.0		### rigid body offset of target volume, in voxels
basin_radius		0.0			### coarse-search resolution, in voxels, 0.0 = none
subvol_aspect		1.0 1.0 1.0		### subvolume aspect ratio



