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RNAlib-2.2.9
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Functions and data structures for constraining secondary structure predictions and evaluation. More...
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Macros | |
| #define | VRNA_CONSTRAINT_FILE 0 |
| Flag for vrna_constraints_add() to indicate that constraints are present in a text file. More... | |
| #define | VRNA_CONSTRAINT_SOFT_MFE 0 |
| Indicate generation of constraints for MFE folding. More... | |
| #define | VRNA_CONSTRAINT_SOFT_PF VRNA_OPTION_PF |
| Indicate generation of constraints for partition function computation. More... | |
| #define | VRNA_DECOMP_PAIR_HP 1 |
| Flag passed to generic softt constraints callback to indicate hairpin loop decomposition step. More... | |
| #define | VRNA_DECOMP_PAIR_IL 2 |
| Indicator for interior loop decomposition step. More... | |
| #define | VRNA_DECOMP_PAIR_ML 3 |
| Indicator for multibranch loop decomposition step. More... | |
| #define | VRNA_DECOMP_ML_ML_ML 5 |
| Indicator for decomposition of multibranch loop part. More... | |
| #define | VRNA_DECOMP_ML_STEM 4 |
| Indicator for decomposition of multibranch loop part. More... | |
| #define | VRNA_DECOMP_ML_ML 6 |
| Indicator for decomposition of multibranch loop part. More... | |
| #define | VRNA_DECOMP_ML_UP 11 |
| Indicator for decomposition of multibranch loop part. More... | |
| #define | VRNA_DECOMP_ML_ML_STEM 20 |
| Indicator for decomposition of multibranch loop part. More... | |
| #define | VRNA_DECOMP_ML_COAXIAL 13 |
| Indicator for decomposition of multibranch loop part. More... | |
| #define | VRNA_DECOMP_EXT_EXT 9 |
| Indicator for decomposition of exterior loop part. More... | |
| #define | VRNA_DECOMP_EXT_UP 8 |
| Indicator for decomposition of exterior loop part. More... | |
| #define | VRNA_DECOMP_EXT_STEM 14 |
| Indicator for decomposition of exterior loop part. More... | |
| #define | VRNA_DECOMP_EXT_EXT_EXT 15 |
| Indicator for decomposition of exterior loop part. More... | |
| #define | VRNA_DECOMP_EXT_STEM_EXT 16 |
| Indicator for decomposition of exterior loop part. More... | |
| #define | VRNA_DECOMP_EXT_STEM_OUTSIDE 17 |
| Indicator for decomposition of exterior loop part. | |
| #define | VRNA_DECOMP_EXT_EXT_STEM 18 |
| Indicator for decomposition of exterior loop part. More... | |
| #define | VRNA_DECOMP_EXT_EXT_STEM1 19 |
| Indicator for decomposition of exterior loop part. More... | |
Functions | |
| void | vrna_constraints_add (vrna_fold_compound_t *vc, const char *constraint, unsigned int options) |
| Add constraints to a vrna_fold_compound_t data structure. More... | |
Functions and data structures for constraining secondary structure predictions and evaluation.