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RNAlib-2.2.9
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Functions and data structures for secondary structure soft constraints. More...
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Data Structures | |
| struct | vrna_sc_s |
| The soft constraints data structure. More... | |
Typedefs | |
| typedef struct vrna_sc_s | vrna_sc_t |
| Typename for the soft constraints data structure vrna_sc_s. | |
| typedef int( | vrna_callback_sc_energy) (int i, int j, int k, int l, char d, void *data) |
| Callback to retrieve pseudo energy contribution for soft constraint feature. More... | |
| typedef FLT_OR_DBL( | vrna_callback_sc_exp_energy) (int i, int j, int k, int l, char d, void *data) |
| Callback to retrieve pseudo energy contribution as Boltzmann Factors for soft constraint feature. More... | |
| typedef vrna_basepair_t *( | vrna_callback_sc_backtrack) (int i, int j, int k, int l, char d, void *data) |
| Callback to retrieve auxiliary base pairs for soft constraint feature. More... | |
Functions | |
| void | vrna_sc_init (vrna_fold_compound_t *vc) |
| Initialize an empty soft constraints data structure within a vrna_fold_compound_t. More... | |
| void | vrna_sc_add_bp (vrna_fold_compound_t *vc, const FLT_OR_DBL **constraints, unsigned int options) |
| Add soft constraints for paired nucleotides. More... | |
| void | vrna_sc_add_up (vrna_fold_compound_t *vc, const FLT_OR_DBL *constraints, unsigned int options) |
| Add soft constraints for unpaired nucleotides. More... | |
| void | vrna_sc_remove (vrna_fold_compound_t *vc) |
| Remove soft constraints from vrna_fold_compound_t. More... | |
| void | vrna_sc_free (vrna_sc_t *sc) |
| Free memory occupied by a vrna_sc_t data structure. More... | |
| void | vrna_sc_add_data (vrna_fold_compound_t *vc, void *data, vrna_callback_free_auxdata *free_data) |
| Add an auxiliary data structure for the generic soft constraints callback function. More... | |
| void | vrna_sc_add_f (vrna_fold_compound_t *vc, vrna_callback_sc_energy *f) |
| Bind a function pointer for generic soft constraint feature (MFE version) More... | |
| void | vrna_sc_add_bt (vrna_fold_compound_t *vc, vrna_callback_sc_backtrack *f) |
| Bind a backtracking function pointer for generic soft constraint feature. More... | |
| void | vrna_sc_add_exp_f (vrna_fold_compound_t *vc, vrna_callback_sc_exp_energy *exp_f) |
| Bind a function pointer for generic soft constraint feature (PF version) More... | |
Functions and data structures for secondary structure soft constraints.