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RNAlib-2.2.7
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Variables compound for 2Dfold partition function folding. More...
Collaboration diagram for TwoDpfold_vars:Data Fields | |
| char * | ptype |
| Precomputed array of pair types. | |
| char * | sequence |
| The input sequence. | |
| short * | S1 |
| The input sequences in numeric form. | |
| unsigned int | maxD1 |
| Maximum allowed base pair distance to first reference. | |
| unsigned int | maxD2 |
| Maximum allowed base pair distance to second reference. | |
| int * | my_iindx |
| Index for moving in quadratic distancy dimensions. | |
| int * | jindx |
| Index for moving in the triangular matrix qm1. | |
| unsigned int * | referenceBPs1 |
| Matrix containing number of basepairs of reference structure1 in interval [i,j]. | |
| unsigned int * | referenceBPs2 |
| Matrix containing number of basepairs of reference structure2 in interval [i,j]. | |
| unsigned int * | bpdist |
| Matrix containing base pair distance of reference structure 1 and 2 on interval [i,j]. | |
| unsigned int * | mm1 |
| Maximum matching matrix, reference struct 1 disallowed. | |
| unsigned int * | mm2 |
| Maximum matching matrix, reference struct 2 disallowed. | |
Variables compound for 2Dfold partition function folding.