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RNAlib-2.2.7
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Collaboration diagram for Suboptimal structures according to Zuker et al. 1989:Functions | |
| vrna_subopt_solution_t * | vrna_subopt_zuker (vrna_fold_compound_t *vc) |
| Compute Zuker type suboptimal structures. More... | |
| SOLUTION * | zukersubopt (const char *string) |
| Compute Zuker type suboptimal structures. More... | |
| SOLUTION * | zukersubopt_par (const char *string, vrna_param_t *parameters) |
| Compute Zuker type suboptimal structures. More... | |
| vrna_subopt_solution_t* vrna_subopt_zuker | ( | vrna_fold_compound_t * | vc | ) |
#include <ViennaRNA/subopt.h>
Compute Zuker type suboptimal structures.
Compute Suboptimal structures according to M. Zuker [20] , i.e. for every possible base pair the minimum energy structure containing the resp. base pair. Returns a list of these structures and their energies.
| vc | fold compound |
| SOLUTION* zukersubopt | ( | const char * | string | ) |
#include <ViennaRNA/subopt.h>
Compute Zuker type suboptimal structures.
Compute Suboptimal structures according to M. Zuker, i.e. for every possible base pair the minimum energy structure containing the resp. base pair. Returns a list of these structures and their energies.
| string | RNA sequence |
| SOLUTION* zukersubopt_par | ( | const char * | string, |
| vrna_param_t * | parameters | ||
| ) |
#include <ViennaRNA/subopt.h>
Compute Zuker type suboptimal structures.