Package ngs
Interface ReadIterator
- All Superinterfaces:
Fragment,FragmentIterator,Read
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Field Summary
Fields inherited from interface ngs.Read
aligned, all, fullyAligned, partiallyAligned, unaligned -
Method Summary
Modifier and TypeMethodDescriptionbooleannextRead()Advance to first Read on initial invocation advance to next Read subsequentlyMethods inherited from interface ngs.Fragment
getFragmentBases, getFragmentBases, getFragmentBases, getFragmentId, getFragmentQualities, getFragmentQualities, getFragmentQualities, isAligned, isPairedMethods inherited from interface ngs.FragmentIterator
nextFragmentMethods inherited from interface ngs.Read
fragmentIsAligned, getNumFragments, getReadBases, getReadBases, getReadBases, getReadCategory, getReadGroup, getReadId, getReadName, getReadQualities, getReadQualities, getReadQualities
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Method Details
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nextRead
Advance to first Read on initial invocation advance to next Read subsequently- Returns:
- false if no more Reads are available.
- Throws:
ErrorMsg- if more Reads should be available, but could not be accessed.
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