Typedef Pam250PAM250 scoring matrix.
PAM250 scoring matrix.
| Defined in | <seqan/score.h> |
|---|---|
| Signature |
typedef Score<int, ScoreMatrix<AminoAcid, ScoreSpecPam250> > Pam250;
|
Overview
A 2
B 0 3
C -2 -4 12
D 0 3 -5 4
E 0 3 -5 3 4
F -3 -4 -4 -6 -5 9
G 1 0 -3 1 0 -5 5
H -1 1 -3 1 1 -2 -2 6
I -1 -2 -2 -2 -2 1 -3 -2 5
J -2 -3 -4 -3 -3 2 -4 -2 4 4
K -1 1 -5 0 0 -5 -2 0 -2 -3 5
L -2 -3 -6 -4 -3 2 -4 -2 2 4 -3 6
M -1 -2 -5 -3 -2 0 -3 -2 2 3 0 4 6
N 0 2 -4 2 1 -3 0 2 -2 -3 1 -3 -2 2
O 0 -1 -3 -1 -1 -2 -1 -1 -1 -1 -1 -1 -1 0 -1
P 1 -1 -3 -1 -1 -5 0 0 -2 -3 -1 -3 -2 0 -1 6
Q 0 1 -5 2 2 -5 -1 3 -2 -2 1 -2 -1 1 -1 0 4
R -2 -1 -4 -1 -1 -4 -3 2 -2 -3 3 -3 0 0 -1 0 1 6
S 1 0 0 0 0 -3 1 -1 -1 -2 0 -3 -2 1 0 1 -1 0 2
T 1 0 -2 0 0 -3 0 -1 0 -1 0 -2 -1 0 0 0 -1 -1 1 3
U 0 -1 -3 -1 -1 -2 -1 -1 -1 -1 -1 -1 -1 0 -1 -1 -1 -1 0 0 -1
V 0 -2 -2 -2 -2 -1 -1 -2 4 3 -2 2 2 -2 -1 -1 -2 -2 -1 0 -1 4
W -6 -5 -8 -7 -7 0 -7 -3 -5 -4 -3 -2 -4 -4 -4 -6 -5 2 -2 -5 -4 -6 17
Y -3 -3 0 -4 -4 7 -5 0 -1 -1 -4 -1 -2 -2 -2 -5 -4 -4 -3 -3 -2 -2 0 10
Z 0 2 -5 3 3 -5 0 2 -2 -3 0 -3 -2 1 -1 0 3 0 0 -1 -1 -2 -6 -4 3
X 0 -1 -3 -1 -1 -2 -1 -1 -1 -1 -1 -1 -1 0 -1 -1 -1 -1 0 0 -1 -1 -4 -2 -1 -1
* -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 1
A B C D E F G H I J K L M N O P Q R S T U V W Y Z X *