Typedef Pam200PAM200 scoring matrix.
PAM200 scoring matrix.
| Defined in | <seqan/score.h> |
|---|---|
| Signature |
typedef Score<int, ScoreMatrix<AminoAcid, ScoreSpecPam200> > Pam200;
|
Overview
A 3
B 0 3
C -3 -5 12
D 0 4 -6 5
E 0 3 -7 4 5
F -4 -6 -6 -7 -7 10
G 1 0 -4 0 0 -6 6
H -2 1 -4 0 0 -2 -3 8
I -1 -3 -3 -3 -3 1 -3 -3 6
J -2 -4 -5 -4 -4 2 -4 -3 4 5
K -2 0 -7 0 0 -7 -2 -1 -2 -3 6
L -2 -4 -7 -5 -4 2 -5 -3 2 5 -4 7
M -2 -3 -6 -4 -3 0 -4 -3 2 3 1 4 8
N 0 3 -5 3 2 -4 0 2 -2 -3 1 -4 -2 3
O 0 -1 -4 -1 -1 -3 -1 -1 -1 -2 -1 -2 -1 0 -1
P 1 -1 -4 -2 -1 -6 -1 -1 -3 -3 -2 -3 -3 -1 -1 7
Q -1 1 -7 2 3 -6 -2 3 -3 -3 1 -2 -1 1 -1 0 5
R -2 -1 -4 -2 -2 -5 -4 2 -2 -3 4 -4 -1 0 -1 0 1 7
S 1 1 0 0 0 -4 1 -1 -2 -3 0 -4 -2 1 0 1 -1 -1 2
T 1 0 -3 0 -1 -4 0 -2 0 -1 0 -2 -1 0 0 0 -1 -1 2 4
U 0 -1 -4 -1 -1 -3 -1 -1 -1 -2 -1 -2 -1 0 -1 -1 -1 -1 0 0 -1
V 0 -3 -2 -3 -2 -2 -2 -3 4 3 -3 2 2 -2 -1 -2 -3 -3 -1 0 -1 5
W -7 -6 -9 -8 -9 0 -8 -3 -6 -4 -4 -2 -5 -5 -5 -7 -6 2 -3 -6 -5 -8 18
Y -4 -4 0 -5 -5 7 -6 0 -2 -2 -5 -2 -3 -2 -3 -6 -5 -5 -3 -3 -3 -3 -1 11
Z 0 2 -7 3 4 -6 -1 2 -3 -3 0 -3 -2 1 -1 -1 4 0 -1 -1 -1 -2 -7 -5 4
X 0 -1 -4 -1 -1 -3 -1 -1 -1 -2 -1 -2 -1 0 -1 -1 -1 -1 0 0 -1 -1 -5 -3 -1 -1
* -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 -9 1
A B C D E F G H I J K L M N O P Q R S T U V W Y Z X *