Typedef Pam40PAM40 scoring matrix.
PAM40 scoring matrix.
| Defined in | <seqan/score.h> |
|---|---|
| Signature |
typedef Score<int, ScoreMatrix<AminoAcid, ScoreSpecPam40> > Pam40;
|
Overview
A 6
B -3 6
C -6 -11 9
D -3 6 -12 7
E -2 2 -12 3 7
F -7 -9 -11 -13 -12 9
G -1 -2 -8 -3 -3 -8 6
H -6 -1 -7 -3 -4 -5 -8 9
I -4 -5 -5 -6 -5 -2 -9 -8 8
J -5 -7 -9 -9 -7 -2 -9 -7 4 4
K -6 -2 -12 -4 -4 -12 -6 -5 -5 -6 6
L -5 -8 -13 -11 -8 -2 -9 -5 -1 3 -7 7
M -4 -8 -12 -9 -6 -3 -7 -9 0 1 -1 1 11
N -3 6 -9 2 -1 -8 -2 1 -4 -5 0 -6 -7 7
O -3 -4 -8 -5 -4 -7 -4 -4 -4 -5 -4 -5 -4 -3 -4
P -1 -6 -7 -7 -5 -9 -5 -3 -7 -7 -6 -6 -7 -5 -4 8
Q -3 -2 -12 -2 2 -11 -6 1 -7 -6 -2 -4 -3 -3 -4 -2 8
R -6 -6 -7 -9 -8 -8 -8 -1 -5 -7 1 -8 -3 -5 -5 -3 -1 8
S 0 -1 -2 -3 -4 -6 -1 -5 -6 -7 -3 -7 -5 0 -2 -1 -4 -2 6
T 0 -2 -7 -4 -5 -8 -5 -6 -2 -4 -2 -6 -3 -1 -3 -3 -5 -5 1 7
U -3 -4 -8 -5 -4 -7 -4 -4 -4 -5 -4 -5 -4 -3 -4 -4 -4 -5 -2 -3 -4
V -2 -7 -5 -7 -6 -7 -5 -6 2 0 -8 -2 -1 -7 -4 -5 -6 -7 -5 -2 -4 7
W -12 -9 -14 -13 -15 -4 -13 -6 -12 -9 -10 -5 -11 -7 -9 -12 -11 -1 -4 -11 -9 -14 13
Y -7 -6 -3 -10 -8 2 -12 -3 -5 -6 -8 -6 -10 -4 -7 -12 -10 -9 -6 -6 -7 -6 -4 10
Z -2 1 -12 2 6 -12 -4 0 -5 -6 -3 -6 -4 -2 -4 -3 6 -3 -4 -5 -4 -6 -13 -8 6
X -3 -4 -8 -5 -4 -7 -4 -4 -4 -5 -4 -5 -4 -3 -4 -4 -4 -5 -2 -3 -4 -4 -9 -7 -4 -4
* -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 1
A B C D E F G H I J K L M N O P Q R S T U V W Y Z X *