------ UW GCG format -----------
comments of any form, up to ".." signal
signal line has seq id, and " Check: #### .."
only 1 seq/file
-- e.g. --- (GCG from GenBank)
LOCUS DROEST6 1819 bp ss-mRNA INV 31-AUG-1987
... much more ...
ORIGIN 1 bp upstream of EcoRI site; chromosome BK9 region 69A1.
INVERTEBRATE:DROEST6 Length: 1819 January 9, 1989 16:48 Check: 8008 ..
1 GAATTCGCCG GAGTGAGGAG CAACATGAAC TACGTGGGAC TGGGACTTAT
51 CATTGTGCTG AGCTGCCTTT GGCTCGGTTC GAACGCGAGT GATACAGATG
---------------------------------------------------
aug 1997
GCG v9 formats:
All v9 GCG formats start with a !! header (!)
!!NA_SEQUENCE 1.0 -- GCG9 format header
!!AA_SEQUENCE 1.0 -- GCG9 format header
!!NA_MULTIPLE_ALIGNMENT 1.0 -- MSF9 format header
!!RICH_SEQUENCE 1.0 -- RSF9 format header
!!RICH_SEQUENCE 1.0
..
{
name acarr58sst
type DNA
longname acarr58sst
checksum 5204
creation-date 8/28/97 21:25:57
strand 1
sequence
a.......actcctaacaacGgAtatCTtGgtT.CtcgcgagGatGAaGaacGcAGcg..
AaatGcGatacgtagtgtgaatcgc.agggatcagtgaatcatcgaatctttgaacgcaa
gttgcgctctcgtg..gtttaaccccccgggagc.acgttcgcttgagtgcc..gctt..
...
}
{
name amgrrbst
... etc ..
}