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| xCell-package | xCell: A package for calculating cell type enrichments. |
| microenvironmentScores | Calculate microenvironment scores |
| rawEnrichmentAnalysis | Calculated raw xCell enrichment scores |
| spillOver | Adjust scores using the spillover compensation method |
| transformScores | Transform scores from raw scores to fractions |
| xCell | xCell: A package for calculating cell type enrichments. |
| xCell.data | xCell datasets |
| xCellAnalysis | The xCell analysis pipeline |
| xCellSignifcanceBetaDist | Calculate significance p-values for the null hypothesis that the cell type is not present in the mixture using a random matrix. |
| xCellSignifcanceRandomMatrix | Calculate significance p-values for the null hypothesis that the cell type is not present in the mixture using a random matrix. |