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| taxa-package | taxa |
| all_names | Return names of data in 'taxonomy()' or 'taxmap()' |
| arrange_obs | Sort user data in 'taxmap()' objects |
| arrange_taxa | Sort the edge list of 'taxmap()' objects |
| branches | Get "branch" taxa |
| classifications | Get classifications of taxa |
| database_list | Database list |
| extract_tax_data | Extracts taxonomy info from vectors with regex |
| ex_hierarchies | An example hierarchies object |
| ex_hierarchy1 | An example Hierarchy object |
| ex_hierarchy2 | An example Hierarchy object |
| ex_hierarchy3 | An example Hierarchy object |
| ex_taxmap | An example taxmap object |
| ex_taxonomy | An example Taxonomy object |
| filtering-helpers | Taxonomic filtering helpers |
| filter_obs | Filter observations with a list of conditions |
| filter_taxa | Filter taxa with a list of conditions |
| get_data | Get data in a taxmap object by name |
| get_dataset | Get a data set from a taxmap object |
| get_data_frame | Get data in a taxonomy or taxmap object by name |
| hierarchies | Make a set of many 'hierarchy()' class objects |
| hierarchy | The Hierarchy class |
| highlight_taxon_ids | Highlight taxon ID column |
| ids | Taxonomic filtering helpers |
| id_classifications | Get ID classifications of taxa |
| internodes | Get "internode" taxa |
| is_branch | Test if taxa are branches |
| is_internode | Test if taxa are "internodes" |
| is_leaf | Test if taxa are leaves |
| is_root | Test if taxa are roots |
| is_stem | Test if taxa are stems |
| leaves | Get leaf taxa |
| leaves_apply | Apply function to leaves of each taxon |
| lookup_tax_data | Convert one or more data sets to taxmap |
| map_data | Create a mapping between two variables |
| map_data_ | Create a mapping without NSE |
| mutate_obs | Add columns to 'taxmap()' objects |
| nms | Taxonomic filtering helpers |
| n_leaves | Get number of leaves |
| n_leaves_1 | Get number of leaves |
| n_obs | Count observations in 'taxmap()' |
| n_obs_1 | Count observation assigned in 'taxmap()' |
| n_subtaxa | Get number of subtaxa |
| n_subtaxa_1 | Get number of subtaxa |
| n_supertaxa | Get number of supertaxa |
| n_supertaxa_1 | Get number of supertaxa |
| obs | Get data indexes associated with taxa |
| obs_apply | Apply function to observations per taxon |
| parse_dataset | Parse options specifying datasets |
| parse_tax_data | Convert one or more data sets to taxmap |
| pick | Pick taxa |
| pop | Pop taxa out |
| print_tree | Print a text tree |
| ranks | Taxonomic filtering helpers |
| ranks_ref | Lookup-table for IDs of taxonomic ranks |
| remove_redundant_names | Remove redundant parts of taxon names |
| replace_taxon_ids | Replace taxon ids |
| roots | Get root taxa |
| sample_frac_obs | Sample a proportion of observations from 'taxmap()' |
| sample_frac_taxa | Sample a proportion of taxa from 'taxonomy()' or 'taxmap()' |
| sample_n_obs | Sample n observations from 'taxmap()' |
| sample_n_taxa | Sample n taxa from 'taxonomy()' or 'taxmap()' |
| select_obs | Subset columns in a 'taxmap()' object |
| span | Span taxa |
| stems | Get stem taxa |
| subtaxa | Get subtaxa |
| subtaxa_apply | Apply function to subtaxa of each taxon |
| supertaxa | Get all supertaxa of a taxon |
| supertaxa_apply | Apply function to supertaxa of each taxon |
| taxa | A class for multiple taxon objects |
| taxmap | Taxmap class |
| taxon | Taxon class |
| taxonomy | Taxonomy class |
| taxonomy_table | Convert taxonomy info to a table |
| taxon_database | Taxonomy database class |
| taxon_id | Taxon ID class |
| taxon_ids | Get taxon IDs |
| taxon_indexes | Get taxon indexes |
| taxon_name | Taxon name class |
| taxon_names | Get taxon names |
| taxon_rank | Taxon rank class |
| taxon_ranks | Get taxon ranks |
| transmute_obs | Replace columns in 'taxmap()' objects |