| genes | Gene locations |
| markers | Markers locations |
| read.genes.info.biomart | Import Biomart annotations from the web service. |
| read.genes.info.tsv | Read Biomart annotation file. |
| read.markers | Read the markers file in TSV format. |
| read.seg.file | Read the segmented CNA file in TSV format. |
| RUBIC | RUBIC Class |
| rubic | Create a new RUBIC object |
| RUBIC-class | RUBIC Class |
| samples | Samples names |
| seg.cna | Segmented CNA |