Visualizing Temporal Microbiome Data

Documentation for package ‘patPRO’ version 1.1.0

patPRO-package	Longitudinal Profiler of Microbiome Data
mergeMapMetaData	Merge Mapping and Data Files
normalizeAlphaDiv	Normalize Alpha Diversity Values for Plotting.
patientMean	Calculate Mean Patient Values.
patPRO	Longitudinal Profiler of Microbiome Data
PatProAlphaDiv	Test Alpha Diversity Data Used as an Example for patPRO.
PatProBacLoad	Test Bacterial Load Data Used as an Example for patPRO.
PatProMap	Test Mapping File Data Used as an Example for patPRO.
PatProOTU	Test Relative Abundance Data Used as an Example for patPRO.
patproPlotThree	Generate Patient Profile of Three Plots.
patproPlotTwo	Generate Patient Profile of Two Plots.
plotBacterialLoad	Plot Supplemental Bacterial Load Information.
plotNormalizedAlphaDiv	Plot Normalized Alpha Diversity.
plotTopTaxa	Plot a Specific Patient Relative Abundance of Top Taxa.
plotTopTaxaMean	Plot the Mean Relative Abundance of Top Taxa.
topAbsAbundDataFrame	Format and Normalize Top Taxa and Bac Load for Plotting.
topAbsAbundPlot	Plot Top Taxa Abundance Normalized to Bacterial Load.
topRelAbundDataFrame	Format Top Taxa Data Frame for Graphing.
transposeRelAbund	Transpose a Data Frame.