Natral AntiSense Transcripts Identification using RNA-seq

Documentation for package ‘NASTIseq’ version 1.0

NASTISeq-package	NASTIseq, an R package for the identification of natural antisense transcripts.
defineFDR	Define FDR threshold using training data
FindNATs	A function to find predicted cis-NAT pairs given a genome annotation file.
getnegativepairs	Extract negative training gene pairs from known gene annotation.
llanti_full	Log likelihood function for the antisense model
llsense_full	Log likelihood function for the sense model
NASTIpredict	A wrapper function for generating prediction scores of the training data.
NASTISeq	NASTIseq, an R package for the identification of natural antisense transcripts.
WholeRoot	Whole root read count data and annotation for Arabidopsis.