| gPCA-package | Batch Effect Detection via Guided Principal Components Analysis |
| caseDat | Case study copy number variation data |
| CumulativeVarPlot | Plot of the Cumulative Variance due to the Principal Components |
| gDist | Density/Distribution Plot for gPCA |
| gPCA | Batch Effect Detection via Guided Principal Components Analysis |
| gPCA.batchdetect | Guided Principal Components Analysis |
| PCplot | Principal Component Plot |