Generalized Minimum Distance of distributions

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Documentation for package ‘GMD’ version 0.3.3

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GMD-package The Package for Generalized Minimum Distance (GMD) Computation
as.ghist Generalized Histogram Computation
as.mhist Generalized Histogram Computation
bedgraph.to.depth Convert a BedGraph fiel to a vector of depth-like signals
cage CAGE Data: Transcription Start Site Distributions (TSSDs) by CAGE tags
cagel CAGE Data: Transcription Start Site Distributions (TSSDs) by CAGE tags
chipseq ChIP-seq data: ChIP-seq Enrichment around TSSs
chipseq_hCD4T ChIP-seq data: ChIP-seq Enrichment around TSSs
chipseq_mES ChIP-seq data: ChIP-seq Enrichment around TSSs
css Clustering Sum-of-Squares for clustering evaluation
css.hclust Clustering Sum-of-Squares for clustering evaluation
elbow The "Elbow" Method for Clustering Evaluation
elbow.batch The "Elbow" Method for Clustering Evaluation
equalize.list Make members of a list equal size
gbreaks Generalized Histogram Computation
gdist Generalized Distance Matrix Computation
get.sep Get row or column lines of separation for heatmap.3
ghist Generalized Histogram Computation
GMD The Package for Generalized Minimum Distance (GMD) Computation
gmdm Generalized Minimum Distance Matrix
gmdm2dist Generalized Minimum Distance Matrix
gmdm_dist Generalized Minimum Distance Matrix
gmdp Generalized Minimum Distance between a pair of distributions
heatmap.3 Enhanced Heatmap Representation with Dendrogram and Partition
is.dist Generalized Distance Matrix Computation
is.ghist Generalized Histogram Computation
is.mhist Generalized Histogram Computation
legend Add Legends to Plots
mhist Generalized Histogram Computation
mhist.summary Bin-wise summary of histograms
mhist2matrix Generalized Histogram Computation
plot.elbow The "Elbow" Method for Clustering Evaluation
plot.gmdm S3 method for class 'gmdm'
plot.gmdp Plot function for class gmdp
plot.mhist S3 method for class 'mhist'.
plot.mhist.summary Bin-wise summary of histograms
print.gmdm Generalized Minimum Distance Matrix
print.gmdp Generalized Minimum Distance between a pair of distributions
summary.gmdp Generalized Minimum Distance between a pair of distributions
ts2df Convert time series to data frame