dPeak (Deconvolution of Peaks in ChIP-seq Analysis)

Documentation for package ‘dpeak’ version 2.0.1

dpeak-package	dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
dpeak	dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
DpeakData-class	Class "DpeakData"
dpeakFit	Fit dPeak model
DpeakFit-class	Class "DpeakFit"
dpeakFit-method	Fit dPeak model
dpeakMotif	Implement de novo motif analysis based on the peak list
DpeakMotif-class	Class "DpeakMotif"
dpeakRead	Import peak list and aligned read files
exampleData	E. coli ChIP-seq Dataset
export	Export deconvolution results to text files
export-method	Export deconvolution results to text files
plot-method	Class "DpeakData"
plot-method	Class "DpeakFit"
plot-method	Class "DpeakMotif"
print-method	Class "DpeakData"
print-method	Class "DpeakFit"
print-method	Class "DpeakMotif"
printEmpty	Return the peak regions without any reads.
printEmpty-method	Return the peak regions without any reads.
show-method	Class "DpeakData"
show-method	Class "DpeakFit"
show-method	Class "DpeakMotif"