| coloc-package | Colocalisation tests of two genetic traits |
| abf.plot | Plotting functions for the coloc package |
| approx.bf.estimates | Internal function, approx.bf.estimates |
| approx.bf.p | Internal function, approx.bf.p |
| bf | Bayes factors to compare specific values of eta |
| bf-method | Bayes factors to compare specific values of eta |
| ci | Methods to extract information from a 'coloc' or 'colocBayes' object |
| ci-method | Methods to extract information from a 'coloc' or 'colocBayes' object |
| coloc-class | Classes '"coloc"' and '"colocBayes"' |
| coloc.abf | Fully Bayesian colocalisation analysis using Bayes Factors |
| coloc.abf.datasets | Bayesian colocalisation analysis using data.frames |
| coloc.abf.snpStats | Bayesian colocalisation analysis using snpStats objects |
| coloc.bma | Wrapper to use colocalization testing within a Bayesian model averaging structure. |
| coloc.test | Function to do colocalisation tests of two traits |
| coloc.test.summary | Colocalisation testing using regression coefficients |
| colocABF-class | Class '"colocABF"' holds objects returned by the 'coloc.abf' function |
| colocBayes-class | Classes '"coloc"' and '"colocBayes"' |
| colocBayesBMA | Classes '"coloc"' and '"colocBayes"' |
| colocBMA | Classes '"coloc"' and '"colocBayes"' |
| colocPCs-class | Class '"colocPCs"' |
| combine.abf | combine.abf |
| eta | Methods to extract information from a 'coloc' or 'colocBayes' object |
| eta-method | Methods to extract information from a 'coloc' or 'colocBayes' object |
| fillin | Impute missing genotypes |
| finemap.abf | Bayesian finemapping analysis |
| logdiff | logdiff |
| logsum | logsum |
| pcs.model | pcs.model |
| pcs.prepare | Functions to prepare principle component models for colocalisation testing |
| plot | Plotting functions for the coloc package |
| plot-method | Plotting functions for the coloc package |
| process.dataset | process.dataset |
| sdY.est | Estimate trait variance, internal function |
| summary | Methods to extract information from a 'coloc' or 'colocBayes' object |
| summary-method | Methods to extract information from a 'coloc' or 'colocBayes' object |
| theta | Methods to extract information from a 'coloc' or 'colocBayes' object |
| theta-method | Methods to extract information from a 'coloc' or 'colocBayes' object |
| Var.data | Var.data |
| Var.data.cc | Var.data |