PeptideShaker
interpretation of proteomics identifications from multiple search engines
PeptideShaker is being developed by Marc Vaudel, Harald Barsnes and Lennart Martens.
PeptideShaker home page: http://compomics.github.io/projects/peptide-shaker.html.
Please cite PeptideShaker as: Vaudel et al.: Nature Biotechnol. 2015 Jan;33(1):22-24.
Licenses
PeptideShaker: Apache License 2.0.
Please note that some of the JAR files used by PeptideShaker
may not have the same license as PeptideShaker. If you
want to use any of these in a different context, make sure to obtain the
original license(s) for the JAR file(s) in question.
The platform independent graphical user interface design is based Nimbus, but
when Nimbus is not available
JGoodies is used, and this has a separate
license.
For licenses regarding Java see www.sun.com.
Supported Platforms
The tool has been developed on Windows XP and Windows 7. But should also work on older
Windows versions and on other platforms, as long as Java 1.6 (or newer) is installed.
Questions?
Please contact the developers of the tool.
See http://compomics.github.io/projects/peptide-shaker.html
for details.
The BSD License for the JGoodies Look
Copyright (c) 2001-2007 JGoodies Karsten Lentzsch. All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
o Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
o Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
o Neither the name of JGoodies Karsten Lentzsch nor the names of
its contributors may be used to endorse or promote products derived
from this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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