chen2meme [options]
Read a CHEN matrix file and convert to MEME format. You may concatenate files for more than one motif.
Reads concatenated CHEN files from standard input.
Concatenated CHEN files describe one or more motifs. Each motif has a header line and a position-weight matrix.
>NANOG
2 64 4 10
1 66 1 12
52 1 0 27
0 0 0 80
0 0 0 80
0 5 74 1
3 1 1 75
3 49 14 14
57 9 0 14
1 0 3 76
1 3 46 30
4 48 12 16
30 16 3 31
31 12 19 18
41 12 12 15
16 20 12 32
>OCT4
11 216 13 99
168 10 1 160
1 6 2 330
12 0 8 319
21 92 213 13
98 5 5 231
68 93 37 141
326 0 4 9
0 0 0 339
0 0 319 20
4 289 19 27
288 1 1 49
212 25 73 29
294 8 23 14
55 28 54 202
| Option | Parameter | Description | Default Behaviour |
|---|---|---|---|
| General Options | |||
| -h | Prints a usage message and exits. | The program runs as normal. | |