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dbxstat |
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% dbxstat Dump statistics for dbx databases EMBOSS database name: edam EMBOSS database field [id]: ns Output file [edam.dbxstat]: |
Go to the output files for this example
Dump statistics for dbx databases
Version: EMBOSS:6.5.6.0
Standard (Mandatory) qualifiers:
[-dbname] string EMBOSS database name (Any string from 2 to
19 characters, matching regular expression
/[A-z][A-z0-9_]+/)
[-field] string [id] EMBOSS database field (Any string)
-outfile outfile [*.dbxstat] Output file name
Additional (Optional) qualifiers: (none)
Advanced (Unprompted) qualifiers:
-indexdir directory Index directory (optional)
-minimum integer [1] Minimum occurrences (Integer 1 or more)
-maximum integer [0] Maximum occurrences (0=no maximum)
(Integer 0 or more)
Associated qualifiers:
"-indexdir" associated qualifiers
-extension string Default file extension
"-outfile" associated qualifiers
-odirectory string Output directory
General qualifiers:
-auto boolean Turn off prompts
-stdout boolean Write first file to standard output
-filter boolean Read first file from standard input, write
first file to standard output
-options boolean Prompt for standard and additional values
-debug boolean Write debug output to program.dbg
-verbose boolean Report some/full command line options
-help boolean Report command line options and exit. More
information on associated and general
qualifiers can be found with -help -verbose
-warning boolean Report warnings
-error boolean Report errors
-fatal boolean Report fatal errors
-die boolean Report dying program messages
-version boolean Report version number and exit
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| Qualifier | Type | Description | Allowed values | Default |
|---|---|---|---|---|
| Standard (Mandatory) qualifiers | ||||
| [-dbname] (Parameter 1) |
string | EMBOSS database name | Any string from 2 to 19 characters, matching regular expression /[A-z][A-z0-9_]+/ | Required |
| [-field] (Parameter 2) |
string | EMBOSS database field | Any string | id |
| -outfile | outfile | Output file name | Output file | <*>.dbxstat |
| Additional (Optional) qualifiers | ||||
| (none) | ||||
| Advanced (Unprompted) qualifiers | ||||
| -indexdir | directory | Index directory (optional) | Directory | |
| -minimum | integer | Minimum occurrences | Integer 1 or more | 1 |
| -maximum | integer | Maximum occurrences (0=no maximum) | Integer 0 or more | 0 |
| Associated qualifiers | ||||
| "-indexdir" associated directory qualifiers | ||||
| -extension | string | Default file extension | Any string | |
| "-outfile" associated outfile qualifiers | ||||
| -odirectory | string | Output directory | Any string | |
| General qualifiers | ||||
| -auto | boolean | Turn off prompts | Boolean value Yes/No | N |
| -stdout | boolean | Write first file to standard output | Boolean value Yes/No | N |
| -filter | boolean | Read first file from standard input, write first file to standard output | Boolean value Yes/No | N |
| -options | boolean | Prompt for standard and additional values | Boolean value Yes/No | N |
| -debug | boolean | Write debug output to program.dbg | Boolean value Yes/No | N |
| -verbose | boolean | Report some/full command line options | Boolean value Yes/No | Y |
| -help | boolean | Report command line options and exit. More information on associated and general qualifiers can be found with -help -verbose | Boolean value Yes/No | N |
| -warning | boolean | Report warnings | Boolean value Yes/No | Y |
| -error | boolean | Report errors | Boolean value Yes/No | Y |
| -fatal | boolean | Report fatal errors | Boolean value Yes/No | Y |
| -die | boolean | Report dying program messages | Boolean value Yes/No | Y |
| -version | boolean | Report version number and exit | Boolean value Yes/No | N |
819 data
435 format
605 identifier
614 operation
245 topic
Total keywords: 5 IDs: 2718
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| Program name | Description |
|---|---|
| dbiblast | Index a BLAST database |
| dbifasta | Index a fasta file database |
| dbiflat | Index a flat file database |
| dbigcg | Index a GCG formatted database |
| dbxcompress | Compress an uncompressed dbx index |
| dbxedam | Index the EDAM ontology using b+tree indices |
| dbxfasta | Index a fasta file database using b+tree indices |
| dbxflat | Index a flat file database using b+tree indices |
| dbxgcg | Index a GCG formatted database using b+tree indices |
| dbxobo | Index an obo ontology using b+tree indices |
| dbxreport | Validate index and report internals for dbx databases |
| dbxresource | Index a data resource catalogue using b+tree indices |
| dbxtax | Index NCBI taxonomy using b+tree indices |
| dbxuncompress | Uncompress a compressed dbx index |
Please report all bugs to the EMBOSS bug team (emboss-bug © emboss.open-bio.org) not to the original author.