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NUCLEIC GENE FINDING |
Predictions of genes and other genomic features
| Program name | Description |
|---|---|
| getorf | Finds and extracts open reading frames (ORFs) |
| marscan | Finds MAR/SAR sites in nucleic sequences |
| plotorf | Plot potential open reading frames |
| showorf | Pretty output of DNA translations |
| sixpack | Display a DNA sequence with 6-frame translation and ORFs |
| syco | Synonymous codon usage Gribskov statistic plot |
| tcode | Fickett TESTCODE statistic to identify protein-coding DNA |
| wobble | Wobble base plot |