|
|
UTILS DATABASE CREATION |
Database installation
| Program name | Description |
|---|---|
| aaindexextract | Extract data from AAINDEX |
| cutgextract | Extract data from CUTG |
| printsextract | Extract data from PRINTS |
| prosextract | Build the PROSITE motif database for use by patmatmotifs |
| rebaseextract | Extract data from REBASE |
| tfextract | Extract data from TRANSFAC |
| cathparse | Generates DCF file from raw CATH files |
| domainnr | Removes redundant domains from a DCF file |
| domainseqs | Adds sequence records to a DCF file |
| domainsse | Add secondary structure records to a DCF file |
| scopparse | Generate DCF file from raw SCOP files |
| ssematch | Search a DCF file for secondary structure matches |
| allversusall | Sequence similarity data from all-versus-all comparison |
| seqnr | Removes redundancy from DHF files |
| domainer | Generates domain CCF files from protein CCF files |
| hetparse | Converts heterogen group dictionary to EMBL-like format |
| pdbparse | Parses PDB files and writes protein CCF files |
| pdbplus | Add accessibility & secondary structure to a CCF file |
| pdbtosp | Convert swissprot:PDB codes file to EMBL-like format |
| sites | Generate residue-ligand CON files from CCF files |