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java.lang.Object | +--org.emboss.jemboss.gui.BuildProgramMenu
BuildProgramMenu class construct the program menus.
| Field Summary | |
private java.util.Hashtable |
acdStore
acd files cache |
private static java.util.Vector |
codons
codons usage tables |
private static java.lang.String[] |
db
database names |
private static java.util.Vector |
matrices
matrices |
private AuthPopup |
splashing
|
private SplashThread |
splashThread
|
| Constructor Summary | |
BuildProgramMenu(javax.swing.JPanel p1,
ScrollPanel p2,
javax.swing.JPanel pform,
javax.swing.JScrollPane scrollProgForm,
java.lang.String embossBin,
java.lang.String[] envp,
JembossParams mysettings,
boolean withSoap,
java.lang.String cwd,
java.lang.String acdDirToParse,
SetUpMenuBar mainMenu,
javax.swing.JFrame f,
java.awt.Dimension jform)
|
|
| Method Summary | |
private java.lang.String |
getAcdText(java.lang.String applName,
java.lang.String acdDirToParse,
JembossParams mysettings,
boolean withSoap)
Get the contents of an ACD file in the form of a String. |
static java.util.Vector |
getCodonUsage()
|
protected static java.lang.String[] |
getDatabaseList()
List of available EMBOSS databases. |
static java.util.Vector |
getMatrices()
|
| Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
| Field Detail |
private static java.lang.String[] db
private static java.util.Vector matrices
private static java.util.Vector codons
private java.util.Hashtable acdStore
private AuthPopup splashing
private SplashThread splashThread
| Constructor Detail |
public BuildProgramMenu(javax.swing.JPanel p1,
ScrollPanel p2,
javax.swing.JPanel pform,
javax.swing.JScrollPane scrollProgForm,
java.lang.String embossBin,
java.lang.String[] envp,
JembossParams mysettings,
boolean withSoap,
java.lang.String cwd,
java.lang.String acdDirToParse,
SetUpMenuBar mainMenu,
javax.swing.JFrame f,
java.awt.Dimension jform)
| Method Detail |
protected static java.lang.String[] getDatabaseList()
public static java.util.Vector getMatrices()
public static java.util.Vector getCodonUsage()
private java.lang.String getAcdText(java.lang.String applName,
java.lang.String acdDirToParse,
JembossParams mysettings,
boolean withSoap)
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