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PROTEIN 3D STRUCTURE |
Protein tertiary structure
| Program name | Description |
|---|---|
| psiphi | Phi and psi torsion angles from protein coordinates |
| domainreso | Remove low resolution domains from a DCF file |
| domainalign | Generate alignments (DAF file) for nodes in a DCF file |
| domainrep | Reorder DCF file to identify representative structures |
| seqalign | Extend alignments (DAF file) with sequences (DHF file) |
| seqfraggle | Removes fragment sequences from DHF files |
| seqsearch | Generate PSI-BLAST hits (DHF file) from a DAF file |
| seqsort | Remove ambiguous classified sequences from DHF files |
| seqwords | Generates DHF files from keyword search of UniProt |
| libgen | Generate discriminating elements from alignments |
| matgen3d | Generate a 3D-1D scoring matrix from CCF files |
| rocon | Generates a hits file from comparing two DHF files |
| rocplot | Performs ROC analysis on hits files |
| siggen | Generates a sparse protein signature from an alignment |
| siggenlig | Generate ligand-binding signatures from a CON file |
| sigscan | Generate hits (DHF file) from a signature search |
| sigscanlig | Search ligand-signature library & write hits (LHF file) |
| contacts | Generate intra-chain CON files from CCF files |
| interface | Generate inter-chain CON files from CCF files |